View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19488_low_25 (Length: 366)
Name: NF19488_low_25
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19488_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 16 - 344
Target Start/End: Original strand, 45055889 - 45056217
Alignment:
| Q |
16 |
atcacaataaggcgagggtagaaggccaggtgaattttcaaacgcactgttcaagaaagagttacaaattaagcagcagaataacacacaatctcttata |
115 |
Q |
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| T |
45055889 |
atcacaataaggcgagggtagaaggccaggtgaattttcaaacgcactgttcaagaaagagttacaaattaagcagcagaataacacacaatctcttata |
45055988 |
T |
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| Q |
116 |
agaaaaacacaatgtaaaagaaggctttttgttaccaagccattgctagctgaatctcctttagtaatttcactgttgctctacgatcacaatctttggc |
215 |
Q |
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| T |
45055989 |
agaaaaacacaatgtaaaagaaggttttttgttaccaagccattgctagctgaatctcctttagtaatttcactgttgctctacgatcacaatctttggc |
45056088 |
T |
|
| Q |
216 |
taaagagagaagaaagcttcttgtgtatgaaattcttgaccttctgcaacatcaaaattaaaagaatcttgattaatatttgatgatacaggataagtga |
315 |
Q |
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| T |
45056089 |
taaagagagaagaaagcttcttgtgtatgaaattcttgaccttctgcaacatcaaaattaaaagaatcttgattaatatttgatgatacaggataagtga |
45056188 |
T |
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| Q |
316 |
taatgcattacttaactaagtgatcacaa |
344 |
Q |
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| T |
45056189 |
taatgcattacttaactaagtgatcacaa |
45056217 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 295
Target Start/End: Original strand, 13356923 - 13357006
Alignment:
| Q |
211 |
ttggctaaagagagaagaaagcttcttgtgtatgaaattcttgaccttctgcaacatcaaaattaaaagaatcttgattaatatt |
295 |
Q |
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| T |
13356923 |
ttggccaaagagagaagaaactttatagtgtatgaaattctttaacttctgcaaca-ccaaattaaaagaactttgatttatatt |
13357006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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