View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19488_low_27 (Length: 344)
Name: NF19488_low_27
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19488_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 11 - 327
Target Start/End: Complemental strand, 15844974 - 15844662
Alignment:
| Q |
11 |
actgatattattggggtgatttcaaatttgaggtttctggttcgaaccttgtataaaataagtcaacctaggtagtagatgaattagtatgaatccccgc |
110 |
Q |
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| T |
15844974 |
actgatattattggggtgatttcaaatttgaggtttctggttcgaaccttgtataaaataagtcaacctaggtagtagatgaattcgtatgaatccccgc |
15844875 |
T |
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| Q |
111 |
taggaccatgaatcactggagggtggaacttgtggaaattagggacatcatgtcaattattgagagagagattcataatctccttattaatgtcacgtga |
210 |
Q |
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| T |
15844874 |
taggaccatgc----ctggagggtggaaattgtggaaattagggacatcatgtcaattattgagagagagattcataatctccttattaatgtcacgtga |
15844779 |
T |
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| Q |
211 |
aaattggacacaagaagataatttttaatcacatagtttcattttgatgattattaatacataatcattttcggtactatctgataattcttttgtttcc |
310 |
Q |
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| T |
15844778 |
aaattggacacaagaagataatttttaatcacatagtttcattttgatgattattaatacataatcattttcggtactatctgataattcttttgtttcc |
15844679 |
T |
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| Q |
311 |
atataggttaccatgat |
327 |
Q |
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| T |
15844678 |
atataggttaccatgat |
15844662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 23 - 276
Target Start/End: Complemental strand, 15852180 - 15851924
Alignment:
| Q |
23 |
ggggtgatttcaaatttgaggtttctggttcgaaccttgtataaaataagtcaacctaggtagtagatgaattagtatgaatccccgctaggaccatgaa |
122 |
Q |
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| T |
15852180 |
ggggtgatttcaaatttgagctttctggttcgaaccttgtataaagtaagtcgacctaggtcggagatgaattggtatgaacccccgctaggaccatgaa |
15852081 |
T |
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| Q |
123 |
t-cactggagggtggaacttgtggaaatta-gggacatcatgtcaattattgagagagagattcataatc-tccttattaatgtcacgtgaaaattggac |
219 |
Q |
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| T |
15852080 |
tcccccggagtggggaacttgtggaaattaggggagatcatgtcaattgtcgaaagagagatatataatcacccttagcaatttcacttgaaaatttgac |
15851981 |
T |
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| Q |
220 |
acaagaagataatttttaatcacatagtttcattttgatgattattaatacataatc |
276 |
Q |
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| T |
15851980 |
gtgagaagatcgtttttaatcacacaatttcattttgatgaatattaatacataatc |
15851924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 199 - 327
Target Start/End: Complemental strand, 15858924 - 15858797
Alignment:
| Q |
199 |
aatgtcacgtgaaaattggacacaagaagataatttttaatcacatagtttcattttgatgattattaatacataatcattttcggtactatctgataat |
298 |
Q |
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| T |
15858924 |
aatgtcacatgaaaatttgacacaagaagatcatttttaatcacacaatttcattttgatgattattaatacataatcctttttggtactatctgataat |
15858825 |
T |
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| Q |
299 |
t-cttttgtttccatataggttaccatgat |
327 |
Q |
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| T |
15858824 |
tgtttttgtttc--tgtaggttaccatgat |
15858797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 327
Target Start/End: Complemental strand, 15865944 - 15865865
Alignment:
| Q |
247 |
tttcattttgatgattattaatacataatcattttcggtactatctgataatt-cttttgtttccatataggttaccatgat |
327 |
Q |
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| T |
15865944 |
tttcattttgatgattattaatacttaatcctttttggtactatctaataattgtttttgttt--ttataggttaccatgat |
15865865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 15859084 - 15859023
Alignment:
| Q |
32 |
tcaaatttgaggtttctggttcgaaccttgtataaaataagtcaacctaggtagtagatgaa |
93 |
Q |
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| T |
15859084 |
tcaaatttgagttttctggtttgaaccttgtaaaaaataagttgacctaggtaggagatgaa |
15859023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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