View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19488_low_28 (Length: 344)
Name: NF19488_low_28
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19488_low_28 |
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| [»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 332
Target Start/End: Original strand, 32657626 - 32657944
Alignment:
| Q |
14 |
atcatctttaacaggccatacttgtgtgcctaaagatttagagtcactcccataaactataccagtccattgtgggacttccacttggaaaagaggacca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32657626 |
atcatctttaacaggccatacttgtgtgcctaaagatttagagtcactcccataaactataccagtccattgtgggacttccacttggaaaagaggacca |
32657725 |
T |
|
| Q |
114 |
acagaaacatcacgagaatcatcactaaatgggtcatattttttctcttcagtcacagctgctttggcagttgatattttcttttttgtcacagctgctt |
213 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32657726 |
acagaaacatcacgagaatcatcactaaatgggtcatattttttctcttcagtcacagctgctttggcagttgatattttcttttttgtcacagctgctt |
32657825 |
T |
|
| Q |
214 |
tggaagttgattttttcttcttgatcatgacatctggtttgccagttgttttctccataggaattttttctgattccataccgtgcaactttgcaacaga |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32657826 |
tggaagttgattttttcttcttgatcatgacatctggtttgctagttgttttctccatcggaattttttctgattccataccgtgcaactttgcaacaga |
32657925 |
T |
|
| Q |
314 |
cagccttttactacgtctc |
332 |
Q |
| |
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||||||||||||||||||| |
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| T |
32657926 |
cagccttttactacgtctc |
32657944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 14 - 332
Target Start/End: Original strand, 32631734 - 32632055
Alignment:
| Q |
14 |
atcatctttaacaggccatacttgtgtgcctaaagatttagagtcactcccataaactataccagtccattgtgggacttccacttggaaaagaggacca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32631734 |
atcatctttaacaggccatacttgtgtgcctaaagatttagagtcactcccataaactataccagtccattgtgggacttccacttggaaaagaggacca |
32631833 |
T |
|
| Q |
114 |
acagaaacatcacgagaatcatcactaaatgggtcatattttttctcttcagtcacagctgctttggcagttgatattttcttttttgtcacagctgctt |
213 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32631834 |
acagaaacatcacgagaatcatcactaaatgggtcgtattttttctcttcagtcacagctgctttggcagttgatattttcttttttgtcacagctgctt |
32631933 |
T |
|
| Q |
214 |
tggaagttgattttttcttcttgatcatgacatctggtttgccagttgttttctccataggaattttttctgattccataccgtgcaactt---tgcaac |
310 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| || || |
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| T |
32631934 |
tggaagttgattttttcttcttgatcatgacgtctggtttgccagttgttttctccataggacttttttctgattccataccatgcaacttaagagcgac |
32632033 |
T |
|
| Q |
311 |
agacagccttttactacgtctc |
332 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
32632034 |
agacagccttttactacgtctc |
32632055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 304
Target Start/End: Original strand, 32582488 - 32582784
Alignment:
| Q |
14 |
atcatctttaacaggccatacttgtgtgcctaaagatttagagtcactcccataaactataccagtccattgtgggacttccacttggaaaagaggacca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
32582488 |
atcatctttaacaggccatacttgtgtgcctaacgatttagagtcactcccataaactacaccagtccattgcgggacttccacttggaaaagaggacca |
32582587 |
T |
|
| Q |
114 |
acagaaaca------tcacgagaatcatcactaaatgggtcatattttttctcttcagtcacagctgctttggcagttgatattttcttttttgtcacag |
207 |
Q |
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|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| |||||| |
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| T |
32582588 |
acagaaacaaccttatcacgagaatcatcactaaatgggtcatattttttctcttcagtcccagctgcattggcagttgattttttcttttttctcacag |
32582687 |
T |
|
| Q |
208 |
ctgctttggaagttgattttttcttcttgatcatgacatctggtttgccagttgttttctccataggaattttttctgattccataccgtgcaactt |
304 |
Q |
| |
|
||||||||| ||||| ||||||||| ||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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|
| T |
32582688 |
ctgctttggtagttggttttttcttgttgatcacgatatctggtttgccagttgttttctccataggacttttttctgattccatagcgtgcaactt |
32582784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 201 - 304
Target Start/End: Original strand, 32600464 - 32600567
Alignment:
| Q |
201 |
gtcacagctgctttggaagttgattttttcttcttgatcatgacatctggtttgccagttgttttctccataggaattttttctgattccataccgtgca |
300 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
32600464 |
gtcacagctgcattggcagttgattttttcttcttgatcacgacatctggtttgccagttgttttctccataggacttttttctgatttcataccgtgca |
32600563 |
T |
|
| Q |
301 |
actt |
304 |
Q |
| |
|
|||| |
|
|
| T |
32600564 |
actt |
32600567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 32600440 - 32600495
Alignment:
| Q |
141 |
aatgggtcatattttttctcttcagtcacagctgctttggcagttgatattttctt |
196 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |
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| T |
32600440 |
aatgggtcatattttttctcttccgtcacagctgcattggcagttgattttttctt |
32600495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 21810 - 21918
Alignment:
| Q |
14 |
atcatctttaacaggccatacttgtgtgcctaaagatttagagtcactcccataaactataccagtccattgtgggacttccacttggaaaagaggacca |
113 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
21810 |
atcatctttaacaggccaaatttgtgtgcctaacaatttagagtcactcccataaacaacaccagtccattgtgggacttccacttggaaaagaggacca |
21909 |
T |
|
| Q |
114 |
acagaaaca |
122 |
Q |
| |
|
||||||||| |
|
|
| T |
21910 |
acagaaaca |
21918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 41164258 - 41164338
Alignment:
| Q |
14 |
atcatctttaacaggccatacttgtgtgcctaaagatttagagtcactcccataaactataccagtccattgtgggacttc |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||| |||||||| |||||||| |
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|
| T |
41164258 |
atcatctttaacaggccatacttgtgtgcctaaccatttagagtcactctcataaactacaccggtccattgcgggacttc |
41164338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 41147496 - 41147586
Alignment:
| Q |
16 |
catctttaacaggccatacttgtgtgcctaaagatttagagtcactcccataaactataccagtccattgtgggacttccacttggaaaag |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| || |||||| ||||||||||| || ||||||||||| ||||| |
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|
| T |
41147496 |
catctttaacaggccatacttgtgtgcctaaccatttagagtcactctcagaaactacaccagtccattccggaacttccacttgaaaaag |
41147586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 293
Target Start/End: Original strand, 41172375 - 41172663
Alignment:
| Q |
14 |
atcatctttaacaggccatacttgtgtgcctaaagatttagagtcactcccataaactataccagtccattgtgggacttccacttggaaaagaggacca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||| || |||||||||||||||| | || |||||| ||||||| || |||| |
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|
| T |
41172375 |
atcatctttaacaggccatacttgtgtgcctgaccatttagagtcactctcagaaactataccagtccactccggaacttccgcttggaacaggtgacct |
41172474 |
T |
|
| Q |
114 |
acagaaaca------tcacgagaatcatca---ctaaatgggtcatattttttctcttcagtcacagctgctttggcagttgatattttcttttttgtca |
204 |
Q |
| |
|
|| |||||| |||||| |||||||| || |||| ||| ||||| ||| |||||| ||| ||| |||||||||||| || |||| | || |
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|
| T |
41172475 |
acggaaacaagcttttcacgaaaatcatcatccatagatggctcagattttctcttttcagtaacatctgggttggcagttgattttctcttctcagttg |
41172574 |
T |
|
| Q |
205 |
cagctgctttggaagttgattttttcttcttgatcatgacatctggtttgccagttgttttctccataggaattttttctgattccata |
293 |
Q |
| |
|
|| ||| ||||| ||| ||||||||||| | | | ||| ||||||||| ||||||||||||||| |||| | ||||||| |||||| |
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|
| T |
41172575 |
catctggtttggcagtagattttttcttttcagtgacgacgtctggtttggcagttgttttctccagaggacatatttctgactccata |
41172663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 41147636 - 41147702
Alignment:
| Q |
222 |
gattttttcttcttgatcatgacatctggtttgccagttgttttctccataggaattttttctgatt |
288 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||| |||| |||| |||||||||| |
|
|
| T |
41147636 |
gattttttctttttgatcacgacatctggtttgccagttgttttttccagaggacacttttctgatt |
41147702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 21015910 - 21015813
Alignment:
| Q |
21 |
ttaacaggccatacttgtgtgcctaaagatttagagtcactcccataaactataccagtccattgtgggacttccacttggaaaagaggaccaacaga |
118 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||||||| || ||| ||||| |||| ||||||||||||| || |||| ||||| |
|
|
| T |
21015910 |
ttaacaggccatacttgtgtgcctaagcatttagagtcactctcataaactacactagtacattgcgggagttccacttggaaacgatgacctacaga |
21015813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 26398504 - 26398601
Alignment:
| Q |
21 |
ttaacaggccatacttgtgtgcctaaagatttagagtcactcccataaactataccagtccattgtgggacttccacttggaaaagaggaccaacaga |
118 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||| ||||||||| |||||| ||||| |||| |||| |||||||| || |||| ||||| |
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|
| T |
26398504 |
ttaacaggccatacttgtgtgcctaagcatttagaatcactctcataaactacaccagtacattgcgggagttccgcttggaaacgatgacctacaga |
26398601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 25363882 - 25363927
Alignment:
| Q |
209 |
tgctttggaagttgattttttcttcttgatcatgacatctggtttg |
254 |
Q |
| |
|
|||||||| ||||||||||||||| | |||||||||||||||||| |
|
|
| T |
25363882 |
tgctttggcagttgattttttcttttcaatcatgacatctggtttg |
25363927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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