View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19488_low_29 (Length: 344)
Name: NF19488_low_29
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19488_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 22 - 326
Target Start/End: Original strand, 31410566 - 31410870
Alignment:
| Q |
22 |
aagtttgcgaaaattcatgttaaaataaagtaaaatcaaaagttatagacaatgtatgccttaaagttacagtcaaacatactgcaacagatgcaatggg |
121 |
Q |
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| T |
31410566 |
aagtttgcgaaaattcatgttaaaataaagtaaaatgaaaagttatagacaatgtatgctttaaagttacagtcaaacatactgcaacagatgcaatggg |
31410665 |
T |
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| Q |
122 |
gtttgttattctctcaatagcctctaaaccttctcttgaaagacggagttttgtatgaccaggatccggttccacaatgggaaaactgtacaaaacacaa |
221 |
Q |
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| T |
31410666 |
gtttgtaattctctcaatagcctccaaaccttctcttgaaagacggagttttgtatgaccaggatccggttccacaatgggaaaactgtacaaaacacaa |
31410765 |
T |
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| Q |
222 |
acaggacaagaataagggaaacttaatcaacttgaaacnnnnnnngcactttacaacaaactttagaaaatcggccatgtacaatggccaagaggatctc |
321 |
Q |
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| T |
31410766 |
acaggacaagaataaaggaaacttaatcaacttgaaacaaaaaatgcactttacaacaaactttagaaaatcggccatgtacaatggccaagaggatctc |
31410865 |
T |
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| Q |
322 |
actaa |
326 |
Q |
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||||| |
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| T |
31410866 |
actaa |
31410870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 86 - 213
Target Start/End: Complemental strand, 38490676 - 38490549
Alignment:
| Q |
86 |
agttacagtcaaacatactgcaacagatgcaatggggtttgttattctctcaatagcctctaaaccttctcttgaaagacggagttttgtatgaccagga |
185 |
Q |
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|||| ||||||||| |||||| ||||||||||||||||||||||||||||| |||||||| || || || ||| ||||| |||||||||||||||||| |
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| T |
38490676 |
agttgcagtcaaacttactgccacagatgcaatggggtttgttattctctcgatagcctccaagccgtcctgtgatagacgaagttttgtatgaccagga |
38490577 |
T |
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| Q |
186 |
tccggttccacaatgggaaaactgtaca |
213 |
Q |
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| T |
38490576 |
tcaggttcgacaatgggaaatctgtaca |
38490549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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