View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19488_low_3 (Length: 590)

Name: NF19488_low_3
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19488_low_3
NF19488_low_3
[»] chr5 (8 HSPs)
chr5 (1-579)||(28873705-28874283)
chr5 (99-414)||(28858466-28858777)
chr5 (1-95)||(28872260-28872354)
chr5 (12-99)||(3031386-3031474)
chr5 (1-91)||(2357750-2357840)
chr5 (423-506)||(28843240-28843330)
chr5 (465-537)||(28858810-28858882)
chr5 (55-99)||(43095005-43095049)
[»] chr7 (2 HSPs)
chr7 (1-92)||(44968817-44968908)
chr7 (1-99)||(35324109-35324207)
[»] chr6 (3 HSPs)
chr6 (12-89)||(367415-367492)
chr6 (12-98)||(369264-369350)
chr6 (32-98)||(31888330-31888396)
[»] chr2 (7 HSPs)
chr2 (1-98)||(5989335-5989432)
chr2 (1-99)||(5983379-5983477)
chr2 (12-99)||(4284981-4285069)
chr2 (32-99)||(18163795-18163862)
chr2 (28-91)||(45485929-45485992)
chr2 (40-99)||(1645015-1645075)
chr2 (39-99)||(13273210-13273270)
[»] chr3 (4 HSPs)
chr3 (1-98)||(12221741-12221838)
chr3 (28-98)||(4315482-4315552)
chr3 (34-91)||(11171987-11172044)
chr3 (1-41)||(27237247-27237287)
[»] chr8 (1 HSPs)
chr8 (1-99)||(14685247-14685348)
[»] chr4 (1 HSPs)
chr4 (31-98)||(53008159-53008226)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-45)||(34386-34430)


Alignment Details
Target: chr5 (Bit Score: 550; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 1 - 579
Target Start/End: Original strand, 28873705 - 28874283
Alignment:
Q  1 caagtaacttgagttagttacttcacatgtaagtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaatccaataac 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28873705 caagtaacttgagttagttacttcacatgcaagtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaatccaataac 28873804  T
Q  101 actaaagaacatcaatgtaaatcgatcaacacatcaagtggttaatgaacttcaaataaggttgattcaaccgtaagtacttgaatttgactttaactag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28873805 actaaagaacatcaatgtaaatcgatcaacacatcaagtggttaatgaacttcaaataaggttgattcaaccgtaagtacttgaatttgactttaactag 28873904  T
Q  201 aacagtccttgatcaaactctacttacctctcagtcaaaattcagattatcatagccctttctcctaggaaatagaaggtttagaaaaataaaaagaaca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28873905 aacagtccttgatcaaactctacttacctctcagtcaaaattcagattaccatagccctttctcctaggaaatagaaggtttagaaaaataaaaagaaca 28874004  T
Q  301 caggttgcagaagagccaaggcgctaaacccaagctctgcgcattaatgctcatttcaaatttgagcatattgttccataactaatgttctctatgtgcc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28874005 caggttgcagaagagccaaggcgctaaacccaagctctgcgcattaatgctcatttcaaatttgagcatattgttccataactaatgttctctatgtgcc 28874104  T
Q  401 ttcttaaatattatgtttagatttatagatgtgtgtcaatattatgtttagatttataaaagagacagttgatacacaacattaatatatgtaatgtgat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28874105 ttcttaaatattatgtttagatttatagatgtgtgtcaatattatgtttagatttataaaagagacagttgatacacaacattaatatatgtaatgtgat 28874204  T
Q  501 actgtgnnnnnnncttaaacgcggttgttgctaaatttattctttcaacgatcatctctccaagtgttacacaggttct 579  Q
    ||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28874205 actgtgtttttttcttaaacgcggttgttgctaaatttattctttcaacgatcatctctccaagtgttacacaggttct 28874283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 99 - 414
Target Start/End: Original strand, 28858466 - 28858777
Alignment:
Q  99 acactaaagaacatcaatgtaaatcgatcaacacatcaagtggttaatgaacttcaaataaggttgattcaaccgtaagtacttgaatttgactttaact 198  Q
    |||||||| ||||| ||||||||||    || ||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||  ||||| |||    
T  28858466 acactaaacaacattaatgtaaatc----aagacatcagatggttaatgaacttcagataaggttgattcaaccgtaagtacttgaattcaactttgact 28858561  T
Q  199 agaacagtccttgatcaaactctacttacctctcagtcaaaattcagattatcatagccctttctcctaggaaatagaaggtttagaaaaataaaaagaa 298  Q
     ||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||     
T  28858562 ggaacaatccttgatcaaactttacttacctctcagtcaaaattcagattatcacagccctttctcctaggaaacggaaggtttagaaaaataaaaagag 28858661  T
Q  299 cacaggttgcagaagagccaaggcgctaaacccaagctctgcgcattaatgctcatttcaaatttgagcatattgttccataactaatgttctctatgtg 398  Q
    |||||| ||||||||||||||||||| ||| ||||||  | | |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||    
T  28858662 cacaggctgcagaagagccaaggcgccaaatccaagccttacacattaatgctcattccaaatttgagcattttgttccataactaatgctctctatgtg 28858761  T
Q  399 ccttcttaaatattat 414  Q
    ||||||||||||||||    
T  28858762 ccttcttaaatattat 28858777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 28872260 - 28872354
Alignment:
Q  1 caagtaacttgagttagttacttcacatgtaagtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaatcca 95  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  28872260 caagtaacttgagttagttacttcacatgcaagtttctaaacaaactgttaaacaaagataagactaattctaaataaaatgaattactaatcca 28872354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 3031474 - 3031386
Alignment:
Q  12 agttagttacttcacatgtaagtttctaaacaaactgctaaacaaagataagactaattctaactaa-aatgaattactaatccaataa 99  Q
    |||||||||||||||||| |||| ||||||||||||  ||| ||||||||| ||||||||||||||| ||||||||||| | |||||||    
T  3031474 agttagttacttcacatgcaagtatctaaacaaactattaagcaaagataaaactaattctaactaataatgaattacttaaccaataa 3031386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 2357750 - 2357840
Alignment:
Q  1 caagtaacttgagttagttacttcacatgtaagtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaa 91  Q
    |||||||||||||||||||||||||  || ||||||||||| ||||| |||| ||||||||| |||||  |||||| || |||| ||||||    
T  2357750 caagtaacttgagttagttacttcaagtgcaagtttctaaataaactactaatcaaagataaaactaaaactaactgaactgaactactaa 2357840  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 423 - 506
Target Start/End: Original strand, 28843240 - 28843330
Alignment:
Q  423 ttatagatgtgtgtcaatattatgtttagatttataaaagag-------acagttgatacacaacattaatatatgtaatgtgatactgtg 506  Q
    |||||||||||| | |||||||||||||||||||||||||||       |||||||||||||| |||| |||| ||| | |||||||||||    
T  28843240 ttatagatgtgttttaatattatgtttagatttataaaagaggtacttaacagttgatacacagcattgatatgtgtgaagtgatactgtg 28843330  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 465 - 537
Target Start/End: Original strand, 28858810 - 28858882
Alignment:
Q  465 acagttgatacacaacattaatatatgtaatgtgatactgtgnnnnnnncttaaacgcggttgttgctaaatt 537  Q
    |||||||||||||  |||| ||||||||||||||||||||||       |||||||||||||| |||||||||    
T  28858810 acagttgatacacggcattgatatatgtaatgtgatactgtgatttattcttaaacgcggttgctgctaaatt 28858882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 43095049 - 43095005
Alignment:
Q  55 aaagataagactaattctaactaaaatgaattactaatccaataa 99  Q
    ||||| || |||||||||||||||| ||||||||||| |||||||    
T  43095049 aaagacaaaactaattctaactaaactgaattactaaaccaataa 43095005  T

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Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 44968817 - 44968908
Alignment:
Q  1 caagtaacttgagttagttacttcacatgtaagtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaat 92  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  44968817 caagaaacttgagttagttacttcacatgcaagtttctaaacaaactactaaacaaagataagactaattctaactaaaatgaattaataat 44968908  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 35324109 - 35324207
Alignment:
Q  1 caagtaacttgagttagttacttcacatgtaagtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaatccaataa 99  Q
    |||||||||||||||||||||||||  || ||||||||||||||||| |||| |||||||||  ||||   |||||||| |||| |||||| |||||||    
T  35324109 caagtaacttgagttagttacttcaagtgcaagtttctaaacaaactactaatcaaagataaagctaaaattaactaaactgaaatactaaaccaataa 35324207  T

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Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 367415 - 367492
Alignment:
Q  12 agttagttacttcacatgtaagtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattact 89  Q
    |||||||||||||||||| |||||||||||||||||  ||| ||||||||| ||||||||||||||||||||||||||    
T  367415 agttagttacttcacatgcaagtttctaaacaaactattaagcaaagataaaactaattctaactaaaatgaattact 367492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 369264 - 369350
Alignment:
Q  12 agttagttacttcacatgtaagtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaatccaata 98  Q
    |||||||||||||||||| ||||||||||||| |||  ||| ||||||||| |||||||||||||||||||||||||| | ||||||    
T  369264 agttagttacttcacatgcaagtttctaaacagactattaagcaaagataaaactaattctaactaaaatgaattacttaaccaata 369350  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 31888396 - 31888330
Alignment:
Q  32 agtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaatccaata 98  Q
    |||||| ||||||||| |||| |||||||||  ||||  ||||||||| ||||||||||| ||||||    
T  31888396 agtttccaaacaaactactaatcaaagataaagctaaaactaactaaactgaattactaaaccaata 31888330  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 5989432 - 5989335
Alignment:
Q  1 caagtaacttgagttagttacttcacatgtaagtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaatccaata 98  Q
    |||||||||||||||||||||||||  || ||||||||||||||||| ||||  ||||||||  ||||  ||||||||| ||||||||||| ||||||    
T  5989432 caagtaacttgagttagttacttcaagtgcaagtttctaaacaaactactaattaaagataaagctaaaactaactaaactgaattactaaaccaata 5989335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 5983477 - 5983379
Alignment:
Q  1 caagtaacttgagttagttacttcacatgtaagtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaatccaataa 99  Q
    |||||||||||| ||||||||||||  || ||||||||||||||||| |||| |||| ||||  ||||  ||||||||| ||||||||||| |||||||    
T  5983477 caagtaacttgatttagttacttcaagtgcaagtttctaaacaaactactaatcaaaaataaagctaaaactaactaaactgaattactaaaccaataa 5983379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 4285069 - 4284981
Alignment:
Q  12 agttagttacttcacatgtaagtttctaaacaaactgctaaacaaagataagactaattctaactaa-aatgaattactaatccaataa 99  Q
    |||||||||||||||||| |||| ||||||||||||  ||| ||||||||| |||||||||||| || ||||||||||| | |||||||    
T  4285069 agttagttacttcacatgcaagtatctaaacaaactattaagcaaagataaaactaattctaaccaataatgaattacttaaccaataa 4284981  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 18163862 - 18163795
Alignment:
Q  32 agtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaatccaataa 99  Q
    |||||| ||||||||| |||| |||||||||  ||||  ||||||||| ||||||||||| |||||||    
T  18163862 agtttccaaacaaactactaatcaaagataaagctaaaactaactaaactgaattactaaaccaataa 18163795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 45485929 - 45485992
Alignment:
Q  28 tgtaagtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaa 91  Q
    |||||||||| ||||||||| |||| |||||||||  ||||  ||||||||| |||||||||||    
T  45485929 tgtaagtttccaaacaaactactaatcaaagataaagctaaaactaactaaactgaattactaa 45485992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 1645075 - 1645015
Alignment:
Q  40 aacaaactgctaaacaaagataaga-ctaattctaactaaaatgaattactaatccaataa 99  Q
    ||||||||  ||| ||||||||| | ||||||||||||||||||||||||| | |||||||    
T  1645075 aacaaactattaagcaaagataaaaactaattctaactaaaatgaattacttaaccaataa 1645015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 13273270 - 13273210
Alignment:
Q  39 aaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaatccaataa 99  Q
    ||||||||| |||| |||||||||  ||||  ||||||||| ||||||||||| |||||||    
T  13273270 aaacaaactactaatcaaagataaagctaaaactaactaaactgaattactaaaccaataa 13273210  T

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Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 12221741 - 12221838
Alignment:
Q  1 caagtaacttgagttagttacttcacatgtaagtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaatccaata 98  Q
    |||||||||||||||||||||||||  || ||| |  |  ||||||| |||| ||||||||| |||||||| ||||||||||||||||||| ||||||    
T  12221741 caagtaacttgagttagttacttcatgtgcaagctattttacaaactactaaccaaagataaaactaattccaactaaaatgaattactaaaccaata 12221838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 4315552 - 4315482
Alignment:
Q  28 tgtaagtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaatccaata 98  Q
    |||||||||| ||||||||| |||| |||||||||  ||||  ||||||||| ||||||||||| ||||||    
T  4315552 tgtaagtttccaaacaaactactaatcaaagataaagctaaaactaactaaactgaattactaaaccaata 4315482  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 11172044 - 11171987
Alignment:
Q  34 tttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaa 91  Q
    |||||||||||||| |||| |||||||||  ||||  ||||||||| |||||||||||    
T  11172044 tttctaaacaaactactaatcaaagataaagctaaaactaactaaactgaattactaa 11171987  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 27237287 - 27237247
Alignment:
Q  1 caagtaacttgagttagttacttcacatgtaagtttctaaa 41  Q
    |||||||||||||||||||||||||  || |||||||||||    
T  27237287 caagtaacttgagttagttacttcaagtgcaagtttctaaa 27237247  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 14685348 - 14685247
Alignment:
Q  1 caagtaacttgagttagttacttcacatgtaagtttctaaacaaactgctaaacaa---agataagactaattctaactaaaatgaattactaatccaat 97  Q
    |||||||||||||||||||||||||  || ||||||||||||||||| |||| |||   | |||  |||||  ||||||||| ||||||||||| |||||    
T  14685348 caagtaacttgagttagttacttcaagtgcaagtttctaaacaaactactaatcaaattatatagaactaaaactaactaaactgaattactaaaccaat 14685249  T
Q  98 aa 99  Q
    ||    
T  14685248 aa 14685247  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 53008226 - 53008159
Alignment:
Q  31 aagtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaatccaata 98  Q
    ||||||||||||||||| |||| |||||||||  ||||  ||||||||| ||||||||||| ||||||    
T  53008226 aagtttctaaacaaactactaatcaaagataaagctaaaactaactaaactgaattactaaaccaata 53008159  T

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Target: scaffold0014 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34430 - 34386
Alignment:
Q  1 caagtaacttgagttagttacttcacatgtaagtttctaaacaaa 45  Q
    |||||||||| |||||||||||||||||| |||| ||||||||||    
T  34430 caagtaactttagttagttacttcacatgcaagtatctaaacaaa 34386  T

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