View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19488_low_31 (Length: 335)
Name: NF19488_low_31
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19488_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 66 - 288
Target Start/End: Complemental strand, 36948433 - 36948211
Alignment:
| Q |
66 |
atgctagaacaagaaaggggtagtaggaaatgtaccgcaatggtttgctagttgatgatgatggaaggaaaagaagcacatataacaaaatctcaaccgc |
165 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||| | |||||||||| | |
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| T |
36948433 |
atgctagaaaaagaaaggggtagtaggaaatgtaccgcaatggtatgctagttgatgatgatggaaggaaaaggagcatatataaaagaatctcaaccac |
36948334 |
T |
|
| Q |
166 |
aacaaaaatcaatgccataaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagagaccagccatgaaagccaaagacagtgagatg |
265 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
36948333 |
aacaaaaatcaatgtcataaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagaggccagcaatgaaagccaaagacagtgagatg |
36948234 |
T |
|
| Q |
266 |
agagagattccaagaattggcat |
288 |
Q |
| |
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|||| |||||||||||||||||| |
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| T |
36948233 |
agagcgattccaagaattggcat |
36948211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 76 - 281
Target Start/End: Complemental strand, 36956499 - 36956294
Alignment:
| Q |
76 |
aagaaaggggtagtaggaaatgtaccgcaatggtttgctagttgatgatgatggaaggaaaagaagcacatataacaaaatctcaaccgcaacaaaaatc |
175 |
Q |
| |
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|||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||| |
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| T |
36956499 |
aagaaaagggtagtgagaaatgtaccgcaatggcttgctagttgatgatgatggaaggaaaagaagcatatataaaaaaatcacaaccgcaacaaaaatc |
36956400 |
T |
|
| Q |
176 |
aatgccataaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagagaccagccatgaaagccaaagacagtgagatgagagagattc |
275 |
Q |
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| |||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||| |||||||| ||||| | ||| ||||||| ||||| |
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| T |
36956399 |
agagccataaccagaaacacatttgccaaccaattaagttcactaataacagtgtacagaccagcaatgaaagcaaaagataatgaaatgagagcgattc |
36956300 |
T |
|
| Q |
276 |
caagaa |
281 |
Q |
| |
|
|||||| |
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|
| T |
36956299 |
caagaa |
36956294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 92 - 294
Target Start/End: Complemental strand, 36935629 - 36935427
Alignment:
| Q |
92 |
gaaatgtaccgcaatggtttgctagttgatgatgatggaaggaaaagaagcacatataacaaaatctcaaccgcaacaaaaatcaatgccataaccagaa |
191 |
Q |
| |
|
|||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||| |||| || |||||||||| |||||||||||||| |
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| T |
36935629 |
gaaatgtaccgcaaggggttgctagttgatggtgatggaaggaaaagaagcacatataacaaaatcacaacggcgacaaaaatcagtgccataaccagaa |
36935530 |
T |
|
| Q |
192 |
acacatttgccaaccaagtaagttcactgataacagtgtagagaccagccatgaaagccaaagacagtgagatgagagagattccaagaattggcattac |
291 |
Q |
| |
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||||||| | ||||| | |||||||||||||||||||||||||||||||||||||||||||| | || || |||| ||||||||||| ||||| || |
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|
| T |
36935529 |
acacattggacaaccgacgtagttcactgataacagtgtagagaccagccatgaaagccaaagataatgcaataagagcgattccaagaagcggcataac |
36935430 |
T |
|
| Q |
292 |
gat |
294 |
Q |
| |
|
||| |
|
|
| T |
36935429 |
gat |
36935427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 66 - 288
Target Start/End: Original strand, 37079286 - 37079508
Alignment:
| Q |
66 |
atgctagaacaagaaaggggtagtaggaaatgtaccgcaatggtttgctagttgatgatgatggaaggaaaagaagcacatataacaaaatctcaaccgc |
165 |
Q |
| |
|
||||||| | |||||||||||| ||||||||| ||||| ||||| | ||||| |||||||| | |||||| | | || |||||| | ||||| | |
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| T |
37079286 |
atgctaggaaaagaaaggggtaataggaaatgagtcgcaagggttttttggttgaagatgatgggacgaaaaggacgatgtacgacaaaaacacaaccac |
37079385 |
T |
|
| Q |
166 |
aacaaaaatcaatgccataaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagagaccagccatgaaagccaaagacagtgagatg |
265 |
Q |
| |
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||| ||||| | || | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| | |
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| T |
37079386 |
aaccaaaattgaagctacaaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagagtccagccataaaagccaaagatagtgagacg |
37079485 |
T |
|
| Q |
266 |
agagagattccaagaattggcat |
288 |
Q |
| |
|
|||| ||||||||||| |||||| |
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|
| T |
37079486 |
agagcgattccaagaagtggcat |
37079508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 200 - 287
Target Start/End: Original strand, 37069660 - 37069747
Alignment:
| Q |
200 |
gccaaccaagtaagttcactgataacagtgtagagaccagccatgaaagccaaagacagtgagatgagagagattccaagaattggca |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || ||||||| | ||||||||| ||||| |
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|
| T |
37069660 |
gccaaccaagtaagttcactgataacagtgtagagaccagtcatgaaagccaaagatagagaaatgagagcggttccaagaagtggca |
37069747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 37066085 - 37066145
Alignment:
| Q |
66 |
atgctagaacaagaaaggggtagtaggaaatgtaccgcaatggtttgctagttgatgatga |
126 |
Q |
| |
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||||||||| ||||||||| ||||||||||||| ||||| | ||| |||||||||||||| |
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|
| T |
37066085 |
atgctagaaaaagaaagggaaagtaggaaatgtatcgcaaggattttctagttgatgatga |
37066145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 92 - 281
Target Start/End: Original strand, 12493341 - 12493530
Alignment:
| Q |
92 |
gaaatgtaccgcaatggtttgctagttgatgatgatggaaggaaaagaagcacatataacaaaatctcaaccgcaacaaaaatcaatgccataaccagaa |
191 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||| |||| ||||||||| |||||||||||||||||||||| |
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|
| T |
12493341 |
gaaatgtaccgcaatggcttgctagttgatgatgatggaaggaaactgagcatatataacgcaatcacaaccgcaataaaaatcaatgccataaccagag |
12493440 |
T |
|
| Q |
192 |
acacatttgccaaccaagtaagttcactgataacagtgtagagaccagccatgaaagccaaagacagtgagatgagagagattccaagaa |
281 |
Q |
| |
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||||||||| |||||||||||||||||| ||||||||||| |||| |||||||||||||||||| | || ||||||| ||||||||||| |
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| T |
12493441 |
acacatttgacaaccaagtaagttcactaataacagtgtaaagactagccatgaaagccaaagataacgaaatgagagcgattccaagaa |
12493530 |
T |
|
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