View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19488_low_35 (Length: 299)
Name: NF19488_low_35
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19488_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 40 - 284
Target Start/End: Original strand, 41737376 - 41737604
Alignment:
| Q |
40 |
tgtagtgagtgaggtctctgaaaatggaaatggtgaggtgagtgtgaggtggagtgtatagtctgaaagaaatatgatactatatataacatatacaacc |
139 |
Q |
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| T |
41737376 |
tgtagtgagtgaggtctctgaaaatggaaatggtgaggtgagtgtgaggtgaagtgtatagtctgaaagaaacatgatac----------------aaac |
41737459 |
T |
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| Q |
140 |
acatgcaatatataaacgaattgaacatgtaatattacagtatgataggcgtggttgtgatatttttgggattgtattgttttatatgggggaagagcaa |
239 |
Q |
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| T |
41737460 |
acatgcaatatataaacgaattgaacatgtaatattatagtatgataggcgtggttgtgatatttttgggaatgtattgttttatatgggggaagagcaa |
41737559 |
T |
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| Q |
240 |
agatctcaaccctctaagtaatgaacaagctggtgttgctaatgt |
284 |
Q |
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| T |
41737560 |
agatatcaaccctctaagtaatgaacaagctggtgttgccaatgt |
41737604 |
T |
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