View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19488_low_38 (Length: 276)
Name: NF19488_low_38
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19488_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 2 - 266
Target Start/End: Complemental strand, 36310107 - 36309843
Alignment:
| Q |
2 |
aaatcaaaacaaatattccttccaccccttgcgctttttgcccatgaacatgaaaaagcaccgaaggaaaactcccagccccaggtttagcaagtccacc |
101 |
Q |
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||||||||||||||||||||||| | |||| || ||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36310107 |
aaatcaaaacaaatattccttcctctccttttgcattttggccaggaacatgaaaatgcaccgaaggaaaactcccagccccaggtttagcaagtccacc |
36310008 |
T |
|
| Q |
102 |
atacactgccttcccccatccaaaatccaaatttctaaatccaccataagtcgtatccaacacaagacaagacctcacaacagtaaacaatggtcgtcct |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36310007 |
atacactgccttcccccatccaaaatccaaatttctaaatccaccataagtcgtatccaacacaagacaagacctcacaacagtaaacaatggtcgtcct |
36309908 |
T |
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| Q |
202 |
ttagtcaccattaaatccaccacataatgcatatactcttcactcacttccccactagctttctt |
266 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36309907 |
ttagtcaccattaaatccgccacagaatgcatatactcttcactcacttccccactagctttctt |
36309843 |
T |
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