View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19488_low_4 (Length: 583)

Name: NF19488_low_4
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19488_low_4
NF19488_low_4
[»] chr5 (11 HSPs)
chr5 (112-416)||(30055084-30055388)
chr5 (112-416)||(30681837-30682141)
chr5 (179-416)||(30718156-30718393)
chr5 (417-523)||(30718425-30718532)
chr5 (17-102)||(30745302-30745387)
chr5 (17-102)||(30055529-30055615)
chr5 (21-102)||(30717872-30717953)
chr5 (17-102)||(30681611-30681696)
chr5 (417-523)||(30054946-30055052)
chr5 (417-523)||(30682173-30682276)
chr5 (20-102)||(30478761-30478843)
[»] chr7 (1 HSPs)
chr7 (523-573)||(48429313-48429363)
[»] chr2 (2 HSPs)
chr2 (527-573)||(29492887-29492933)
chr2 (524-573)||(29497297-29497346)
[»] chr1 (2 HSPs)
chr1 (523-573)||(6854498-6854548)
chr1 (523-573)||(6865211-6865261)
[»] chr6 (1 HSPs)
chr6 (489-523)||(29156133-29156167)


Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 112 - 416
Target Start/End: Complemental strand, 30055388 - 30055084
Alignment:
Q  112 tattttaatgattctatctagagcaaactgattgatttacttattgtagatgttgcacaaatgaaatgtggttgtgtttgagtcgaacacatctgatgtg 211  Q
    |||||||||||||||| |||||||||| |||||||||||||| ||| ||| ||||||||||||||  |||||||||  ||||||||||||||||||||||    
T  30055388 tattttaatgattctagctagagcaaagtgattgatttacttcttgcagacgttgcacaaatgaagggtggttgtgcctgagtcgaacacatctgatgtg 30055289  T
Q  212 aaaatgggaaatattagtaaatatacactatcggcgtaaaattgttttgcattaacattcagatagagctcattgttttcatgttttgccaagctatgtt 311  Q
    |||||||| ||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  30055288 aaaatgggcaatattagtgaatatacactatcggcgtgaaattgttttgcattaacgttcagatagagctcattgttttcatgttttgccaagctacgtt 30055189  T
Q  312 ttcatatctacaatgcaattgtataattcttcttttccgccatgcccccctcggcctcatcattgaacttagttgattctccaaattattaaaatcaaac 411  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30055188 ttcatctctacaatgcaattgtataattcttcttttccaccatgcctccctcggcctcatcatcgaacttagttgattctccaaattattaaaatcaaac 30055089  T
Q  412 cacca 416  Q
    |||||    
T  30055088 cacca 30055084  T

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Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 112 - 416
Target Start/End: Original strand, 30681837 - 30682141
Alignment:
Q  112 tattttaatgattctatctagagcaaactgattgatttacttattgtagatgttgcacaaatgaaatgtggttgtgtttgagtcgaacacatctgatgtg 211  Q
    |||||||||||||||| |||||||||| || ||||||||||  ||| ||| ||||||||||||||  |||||||||  ||||||||||||||||||||||    
T  30681837 tattttaatgattctagctagagcaaagtggttgatttactgcttgcagacgttgcacaaatgaagggtggttgtgcctgagtcgaacacatctgatgtg 30681936  T
Q  212 aaaatgggaaatattagtaaatatacactatcggcgtaaaattgttttgcattaacattcagatagagctcattgttttcatgttttgccaagctatgtt 311  Q
    ||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  30681937 aaaattggaaatattagtgaatatacactatcagcgtaaaattgttttgcattaacgttcagatagagctcattgtttccatgttttgccaagctatgtt 30682036  T
Q  312 ttcatatctacaatgcaattgtataattcttcttttccgccatgcccccctcggcctcatcattgaacttagttgattctccaaattattaaaatcaaac 411  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30682037 ttcatctctacaatgcaattgtataattcttcttttccgccatgcctccctcggcctcatcatcgaacttagttgattctccaaattattaaaatcaaac 30682136  T
Q  412 cacca 416  Q
    |||||    
T  30682137 cacca 30682141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 179 - 416
Target Start/End: Original strand, 30718156 - 30718393
Alignment:
Q  179 gtggttgtgtttgagtcgaacacatctgatgtgaaaatgggaaatattagtaaatatacactatcggcgtaaaattgttttgcattaacattcagataga 278  Q
    |||||||||  |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  30718156 gtggttgtgcatgagtcgaacgcatctgatgtgaaaatgggaaatattagtgaatatacactatcggcgtaaaattggtttgcattaacgttcagataga 30718255  T
Q  279 gctcattgttttcatgttttgccaagctatgttttcatatctacaatgcaattgtataattcttcttttccgccatgcccccctcggcctcatcattgaa 378  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30718256 gctcactgttttcatgttttgccaagctatgttttcatctctacaatgcaattgtataattcttcttttccgccatgcccccctcggcctcatcatcgaa 30718355  T
Q  379 cttagttgattctccaaattattaaaatcaaaccacca 416  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30718356 cttagttgattctccaaattattaaaatcaaaccacca 30718393  T

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Target: chr5; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 417 - 523
Target Start/End: Original strand, 30718425 - 30718532
Alignment:
Q  417 aattatcctggtttatgcacaatttatcgggcgccgatatttgttggtgcactctccc-ctctttttcttccttgttaaactgtgtgattacttgtaata 515  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  30718425 aattatcctggtttatgcacaatttatctggcgccgatatttgttggtgcactctccctctctttttcttctttgttaaactgtgtgattacttgtaata 30718524  T
Q  516 ttagatag 523  Q
    ||||||||    
T  30718525 ttagatag 30718532  T

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Target: chr5; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 30745387 - 30745302
Alignment:
Q  17 atatataatattgattaccttcacaaattagcttctactgaatatatttaagaactcatccttggtttatttcaaattcttgtttc 102  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30745387 atatataatattgattaccttcacaaattagcttccactgaatatatttaagaactcatccttgttttatttcaaattcttgtttc 30745302  T

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Target: chr5; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 30055615 - 30055529
Alignment:
Q  17 atatataatatt-gattaccttcacaaattagcttctactgaatatatttaagaactcatccttggtttatttcaaattcttgtttc 102  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30055615 atatataatatttgattaccttcacaaattagcttccactgaatatatttaagaactcatccttgttttatttcaaattcttgtttc 30055529  T

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Target: chr5; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 30717872 - 30717953
Alignment:
Q  21 ataatattgattaccttcacaaattagcttctactgaatatatttaagaactcatccttggtttatttcaaattcttgtttc 102  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30717872 ataatattgatttccttcacaaattagcttccactgaatatatttaagaactcatccttgttttatttcaaattcttgtttc 30717953  T

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Target: chr5; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 30681611 - 30681696
Alignment:
Q  17 atatataatattgattaccttcacaaattagcttctactgaatatatttaagaactcatccttggtttatttcaaattcttgtttc 102  Q
    ||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||    
T  30681611 atatataatattgattaacttcgcaaattagcttccactgaatatatttaagaactcatccttattttatttcaaattcttgtttc 30681696  T

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Target: chr5; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 417 - 523
Target Start/End: Complemental strand, 30055052 - 30054946
Alignment:
Q  417 aattatcctggtttatgcacaatttatcgggcgccgatatttgttggtgcactctccc-ctctttttcttccttgttaaactgtgtgattacttgtaata 515  Q
    ||||||||||||| |||||||||||||| |||||| ||||||||| |||||||||||  |||||||||||| || ||||| |||||||||||||||||||    
T  30055052 aattatcctggtt-atgcacaatttatctggcgccaatatttgtttgtgcactctccttctctttttcttcttttttaaattgtgtgattacttgtaata 30054954  T
Q  516 ttagatag 523  Q
    ||||||||    
T  30054953 ttagatag 30054946  T

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Target: chr5; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 417 - 523
Target Start/End: Original strand, 30682173 - 30682276
Alignment:
Q  417 aattatcctggtttatgcacaatttatcgggcgccgatatttgttggtgcactctcc-cctctttttcttccttgttaaactgtgtgattacttgtaata 515  Q
    ||||||||||||| |||||||||||||| |||||| ||||||||| |||||||||||  ||||||||||   || |||||||||||||||||||||||||    
T  30682173 aattatcctggtt-atgcacaatttatctggcgccaatatttgtttgtgcactctccttctctttttct---tttttaaactgtgtgattacttgtaata 30682268  T
Q  516 ttagatag 523  Q
    ||||||||    
T  30682269 ttagatag 30682276  T

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Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 30478843 - 30478761
Alignment:
Q  20 tataatattgattaccttcacaaattagcttctactgaatatatttaagaactcatccttggtttatttcaaattcttgtttc 102  Q
    ||||||||||||||||||||||| |||| || |||  |||||||||||||||||||||||  |||||||||||||||||||||    
T  30478843 tataatattgattaccttcacaatttagtttttaccaaatatatttaagaactcatccttattttatttcaaattcttgtttc 30478761  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 523 - 573
Target Start/End: Original strand, 48429313 - 48429363
Alignment:
Q  523 gtgttggaaaatacatcaggaattgattttcctatgttattgttccctatg 573  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  48429313 gtgttggaaaatacatcagtaattgattttcctatgttattgttccctatg 48429363  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 527 - 573
Target Start/End: Complemental strand, 29492933 - 29492887
Alignment:
Q  527 tggaaaatacatcaggaattgattttcctatgttattgttccctatg 573  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  29492933 tggaaaatacatcagtaattgattttcctatgttattgttccctatg 29492887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 524 - 573
Target Start/End: Complemental strand, 29497346 - 29497297
Alignment:
Q  524 tgttggaaaatacatcaggaattgattttcctatgttattgttccctatg 573  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||    
T  29497346 tgttggaaaatacatcaataattgattttcctatgttattgttccctatg 29497297  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 523 - 573
Target Start/End: Complemental strand, 6854548 - 6854498
Alignment:
Q  523 gtgttggaaaatacatcaggaattgattttcctatgttattgttccctatg 573  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  6854548 gtgttggaaaatacatcagtagttgattttcctatgttattgttccctatg 6854498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 523 - 573
Target Start/End: Complemental strand, 6865261 - 6865211
Alignment:
Q  523 gtgttggaaaatacatcaggaattgattttcctatgttattgttccctatg 573  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  6865261 gtgttggaaaatacatcagtagttgattttcctatgttattgttccctatg 6865211  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 523
Target Start/End: Complemental strand, 29156167 - 29156133
Alignment:
Q  489 tgttaaactgtgtgattacttgtaatattagatag 523  Q
    ||||||||||||||||||||||||||| |||||||    
T  29156167 tgttaaactgtgtgattacttgtaataatagatag 29156133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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