View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19488_low_40 (Length: 258)

Name: NF19488_low_40
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19488_low_40
NF19488_low_40
[»] chr3 (5 HSPs)
chr3 (23-243)||(1725825-1726046)
chr3 (64-119)||(51118481-51118537)
chr3 (70-124)||(16242190-16242244)
chr3 (64-117)||(25530734-25530787)
chr3 (72-120)||(8995034-8995082)
[»] chr6 (2 HSPs)
chr6 (72-118)||(29230152-29230198)
chr6 (72-120)||(24966933-24966981)
[»] chr4 (7 HSPs)
chr4 (70-120)||(4611510-4611560)
chr4 (72-122)||(26047143-26047193)
chr4 (72-122)||(26052324-26052374)
chr4 (72-120)||(21166483-21166531)
chr4 (72-122)||(8928311-8928361)
chr4 (72-122)||(11553066-11553115)
chr4 (81-118)||(17264551-17264588)
[»] chr1 (7 HSPs)
chr1 (66-120)||(34104961-34105015)
chr1 (72-120)||(15182731-15182779)
chr1 (72-121)||(24901258-24901307)
chr1 (71-120)||(27912112-27912161)
chr1 (72-116)||(10828562-10828606)
chr1 (72-120)||(15542308-15542356)
chr1 (72-120)||(20033118-20033166)
[»] chr8 (4 HSPs)
chr8 (72-118)||(11222342-11222388)
chr8 (72-121)||(3821809-3821858)
chr8 (67-120)||(20268433-20268486)
chr8 (67-120)||(21055062-21055115)
[»] chr2 (4 HSPs)
chr2 (64-121)||(42153675-42153732)
chr2 (66-122)||(16042661-16042717)
chr2 (83-116)||(21539459-21539492)
chr2 (72-120)||(17891780-17891828)
[»] chr7 (5 HSPs)
chr7 (72-120)||(12865259-12865307)
chr7 (64-118)||(2505884-2505938)
chr7 (72-120)||(12612788-12612836)
chr7 (70-118)||(21707339-21707387)
chr7 (72-120)||(44192361-44192409)
[»] chr5 (4 HSPs)
chr5 (71-122)||(20102891-20102942)
chr5 (72-111)||(26271252-26271291)
chr5 (64-121)||(28280323-28280381)
chr5 (79-120)||(22010259-22010300)
[»] scaffold0043 (1 HSPs)
scaffold0043 (72-120)||(88436-88484)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 23 - 243
Target Start/End: Complemental strand, 1726046 - 1725825
Alignment:
Q  23 aggaaaaattagttattacccgtaac-tcataattgggggtgactaaataaaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcatcaa 121  Q
    ||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1726046 aggaaaaatcagttattccccgtaacatcataattgggggtgactaaataaaaatgattgaaaaatatgttgaaaatatcgtaagatgacatgtcatcaa 1725947  T
Q  122 tagctaaggtaactataactcacaatattattgttgttgcatttgttcgtaagtgacatatttgttaaatggatgttaaacatgtttttcgaaattcttg 221  Q
    |||| | ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |    
T  1725946 tagccagggtaactataattcacaatattattgttgttgcatttgttcgtcagtgacatatttgtcaaatggatgttaaacatgtttttcgaaattctgg 1725847  T
Q  222 tcttcgaaaggaggtttatagt 243  Q
    ||||| ||||||||||||||||    
T  1725846 tcttcaaaaggaggtttatagt 1725825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 51118537 - 51118481
Alignment:
Q  64 actaaataaaaatgattgaaaaa-tatgttgaaaataccgtaagatgacatgtcatc 119  Q
    ||||||||||||||| ||||||| |||| | |||||| |||||||||||||||||||    
T  51118537 actaaataaaaatgactgaaaaaatatgctaaaaataacgtaagatgacatgtcatc 51118481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 16242244 - 16242190
Alignment:
Q  70 taaaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcatcaatag 124  Q
    ||||||||| ||||||||||| | | |||| ||||||||||| ||||||||||||    
T  16242244 taaaaatgagtgaaaaatatgctaagaataacgtaagatgacctgtcatcaatag 16242190  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 25530787 - 25530734
Alignment:
Q  64 actaaataaaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtca 117  Q
    ||||||||||||||| ||||||||||| | | |||| |||||||| ||||||||    
T  25530787 actaaataaaaatgactgaaaaatatgctaagaataacgtaagataacatgtca 25530734  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 8995082 - 8995034
Alignment:
Q  72 aaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcatca 120  Q
    |||||||  |||||| |||||||||||| ||||||||||||| ||||||    
T  8995082 aaaatgaccgaaaaacatgttgaaaataacgtaagatgacatatcatca 8995034  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 29230198 - 29230152
Alignment:
Q  72 aaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcat 118  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||    
T  29230198 aaaatgactgaaaaatatgttgaaaataacgtaagatgacatgtcat 29230152  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 24966981 - 24966933
Alignment:
Q  72 aaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcatca 120  Q
    ||||||| ||||||||||| |||||||| ||||||||||| | ||||||    
T  24966981 aaaatgactgaaaaatatgctgaaaataacgtaagatgacctatcatca 24966933  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 4611560 - 4611510
Alignment:
Q  70 taaaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcatca 120  Q
    ||||||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  4611560 taaaaatgactgaaaaatatgttgaaaataacgtaagatgacctgtcatca 4611510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 26047193 - 26047143
Alignment:
Q  72 aaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcatcaat 122  Q
    ||||||| |||||| ||||||||||||| ||||||||||||||||||||||    
T  26047193 aaaatgactgaaaagtatgttgaaaataacgtaagatgacatgtcatcaat 26047143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 26052374 - 26052324
Alignment:
Q  72 aaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcatcaat 122  Q
    ||||||| |||||| ||||||||||||| ||||||||||||||||||||||    
T  26052374 aaaatgactgaaaagtatgttgaaaataacgtaagatgacatgtcatcaat 26052324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 21166531 - 21166483
Alignment:
Q  72 aaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcatca 120  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||    
T  21166531 aaaatgattgaaaaatatgttgaaaataatataagatgacatgtcatca 21166483  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 8928361 - 8928311
Alignment:
Q  72 aaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcatcaat 122  Q
    ||||||| ||||||||||| | |||||| ||||||||||||||||||||||    
T  8928361 aaaatgactgaaaaatatgctaaaaataacgtaagatgacatgtcatcaat 8928311  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 11553066 - 11553115
Alignment:
Q  72 aaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcatcaat 122  Q
    ||||||||| ||||||||||| ||| || ||||||||||||||||||||||    
T  11553066 aaaatgattaaaaaatatgttcaaa-taacgtaagatgacatgtcatcaat 11553115  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 17264551 - 17264588
Alignment:
Q  81 gaaaaatatgttgaaaataccgtaagatgacatgtcat 118  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  17264551 gaaaaatatgttgaaaataacgtaagatgaaatgtcat 17264588  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 34104961 - 34105015
Alignment:
Q  66 taaataaaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcatca 120  Q
    |||||||||||||||||||||||| || |||||| ||||||||||| ||||||||    
T  34104961 taaataaaaatgattgaaaaatatattaaaaataacgtaagatgacttgtcatca 34105015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 15182779 - 15182731
Alignment:
Q  72 aaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcatca 120  Q
    ||||||| |||||||||||||||||||| |||| ||||| |||||||||    
T  15182779 aaaatgagtgaaaaatatgttgaaaataacgtatgatgaaatgtcatca 15182731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 24901258 - 24901307
Alignment:
Q  72 aaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcatcaa 121  Q
    ||||||||||||||||||| | |||||| ||||||||||| ||| |||||    
T  24901258 aaaatgattgaaaaatatgctaaaaataacgtaagatgacttgtaatcaa 24901307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 27912112 - 27912161
Alignment:
Q  71 aaaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcatca 120  Q
    |||||||| ||||||| ||||| | |||| ||||||||||||||||||||    
T  27912112 aaaaatgactgaaaaacatgttaagaataacgtaagatgacatgtcatca 27912161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 10828562 - 10828606
Alignment:
Q  72 aaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtc 116  Q
    ||||||| ||||||||||| |||||||| ||||| ||||||||||    
T  10828562 aaaatgactgaaaaatatgctgaaaataacgtaaaatgacatgtc 10828606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 15542356 - 15542308
Alignment:
Q  72 aaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcatca 120  Q
    ||||||| ||||||| ||||| | |||| ||||||||||||||||||||    
T  15542356 aaaatgactgaaaaacatgttaagaataacgtaagatgacatgtcatca 15542308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 20033166 - 20033118
Alignment:
Q  72 aaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcatca 120  Q
    |||||| |||||||||||| | |||||| |||||||| |||||||||||    
T  20033166 aaaatggttgaaaaatatgctaaaaataacgtaagataacatgtcatca 20033118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 11222342 - 11222388
Alignment:
Q  72 aaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcat 118  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||||    
T  11222342 aaaatgactgaaaaatatgttgaaaataatgtaagatgacatgtcat 11222388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 3821809 - 3821858
Alignment:
Q  72 aaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcatcaa 121  Q
    ||||||| | |||||||||||||||||| |||||||| || |||||||||    
T  3821809 aaaatgactaaaaaatatgttgaaaataacgtaagataacctgtcatcaa 3821858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 20268433 - 20268486
Alignment:
Q  67 aaataaaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcatca 120  Q
    |||||||||||||||||||||||||| || ||| || |||||| | ||||||||    
T  20268433 aaataaaaatgattgaaaaatatgttaaatataacgcaagatggcttgtcatca 20268486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 21055062 - 21055115
Alignment:
Q  67 aaataaaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcatca 120  Q
    |||||||||||||||||||||||||| || ||| || |||||| | ||||||||    
T  21055062 aaataaaaatgattgaaaaatatgttaaatataacgcaagatggcttgtcatca 21055115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 42153675 - 42153732
Alignment:
Q  64 actaaataaaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcatcaa 121  Q
    ||||||||||||||| ||||||||||||| |||||| || |||||||  |||||||||    
T  42153675 actaaataaaaatgactgaaaaatatgttaaaaataacggaagatgatctgtcatcaa 42153732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 16042717 - 16042661
Alignment:
Q  66 taaataaaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcatcaat 122  Q
    ||||||||||||||||||| ||||||| | |||| ||||||||| | ||||||||||    
T  16042717 taaataaaaatgattgaaacatatgttaagaataacgtaagatggcttgtcatcaat 16042661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 21539492 - 21539459
Alignment:
Q  83 aaaatatgttgaaaataccgtaagatgacatgtc 116  Q
    ||||||||||||||||| ||||||||||||||||    
T  21539492 aaaatatgttgaaaataacgtaagatgacatgtc 21539459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 17891780 - 17891828
Alignment:
Q  72 aaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcatca 120  Q
    ||||||| ||||||| ||||| | |||| ||||||||||||||||||||    
T  17891780 aaaatgactgaaaaacatgttaagaataacgtaagatgacatgtcatca 17891828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 12865259 - 12865307
Alignment:
Q  72 aaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcatca 120  Q
    ||||||||||||||||||| |||||||| ||||||||||  ||||||||    
T  12865259 aaaatgattgaaaaatatgctgaaaataacgtaagatgatttgtcatca 12865307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 2505884 - 2505938
Alignment:
Q  64 actaaataaaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcat 118  Q
    ||||||||||||||| ||||||||||| | | |||| |||||||||| |||||||    
T  2505884 actaaataaaaatgactgaaaaatatgctaagaataacgtaagatgaaatgtcat 2505938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 12612788 - 12612836
Alignment:
Q  72 aaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcatca 120  Q
    ||||||| | ||||||||||||||||||  |||||||||| ||||||||    
T  12612788 aaaatgactaaaaaatatgttgaaaataatgtaagatgacctgtcatca 12612836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 21707387 - 21707339
Alignment:
Q  70 taaaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcat 118  Q
    ||||||||||||||||||||| | | |||| ||||||||||| ||||||    
T  21707387 taaaaatgattgaaaaatatgctaagaataacgtaagatgacgtgtcat 21707339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 44192409 - 44192361
Alignment:
Q  72 aaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcatca 120  Q
    ||||||||||||||| ||| |||||||| ||||||||||  ||||||||    
T  44192409 aaaatgattgaaaaacatgctgaaaataacgtaagatgatgtgtcatca 44192361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 20102942 - 20102891
Alignment:
Q  71 aaaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcatcaat 122  Q
    |||||||| ||||||||||| | |||||| ||||||||| ||||||||||||    
T  20102942 aaaaatgactgaaaaatatgctaaaaataacgtaagatggcatgtcatcaat 20102891  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 26271252 - 26271291
Alignment:
Q  72 aaaatgattgaaaaatatgttgaaaataccgtaagatgac 111  Q
    |||||||| ||||||||||||||||||| |||||||||||    
T  26271252 aaaatgatagaaaaatatgttgaaaataacgtaagatgac 26271291  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 28280323 - 28280381
Alignment:
Q  64 actaaataaaaatgattgaaaaa-tatgttgaaaataccgtaagatgacatgtcatcaa 121  Q
    ||||||||||||||| | ||||| |||| | |||||| |||||||||||||||||||||    
T  28280323 actaaataaaaatgactaaaaaaatatgctaaaaataacgtaagatgacatgtcatcaa 28280381  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 22010300 - 22010259
Alignment:
Q  79 ttgaaaaatatgttgaaaataccgtaagatgacatgtcatca 120  Q
    |||||||||||| |||||||  ||||||||||||||||||||    
T  22010300 ttgaaaaatatgatgaaaattacgtaagatgacatgtcatca 22010259  T

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Target: scaffold0043 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 88484 - 88436
Alignment:
Q  72 aaaatgattgaaaaatatgttgaaaataccgtaagatgacatgtcatca 120  Q
    ||||||||||||||| ||| | | |||| ||||||||||||||||||||    
T  88484 aaaatgattgaaaaacatgctaagaataacgtaagatgacatgtcatca 88436  T

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