View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19488_low_42 (Length: 248)
Name: NF19488_low_42
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19488_low_42 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 6421566 - 6421334
Alignment:
| Q |
16 |
cataccacccatatggggatcaaaaaggacccttaaacagggaaagtagaactatgtaataaagaaagtggtcgttagttgtatttcaagacatgcttca |
115 |
Q |
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| T |
6421566 |
cataccacccatatggggatcaaaaaggacccttaaacagggaaagtagaactatgtaataaagaaagtggtcgttagttgtatttcaagacatgcttca |
6421467 |
T |
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| Q |
116 |
atgatgttcttgcaatatcactcacgtttgtatcaaccttatcattgcactctgtctctctatgtgagtgtgatcttttgtctcctaaaacaaacccttt |
215 |
Q |
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| T |
6421466 |
atgatgttcttgcaatatcactcacgtttgtatcaaccttatcattgcactctgtctctctatgtgagtgtgatcttttgtctcctaaaacaaacccttt |
6421367 |
T |
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| Q |
216 |
ttatacattgactaaactttattttccagcttg |
248 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
6421366 |
ttatacattgactaaactttattttccagcttg |
6421334 |
T |
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