View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19488_low_43 (Length: 247)

Name: NF19488_low_43
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19488_low_43
NF19488_low_43
[»] chr7 (4 HSPs)
chr7 (1-115)||(48429382-48429496)
chr7 (1-108)||(37770866-37770975)
chr7 (168-243)||(48426712-48426787)
chr7 (115-171)||(48426627-48426683)
[»] chr1 (5 HSPs)
chr1 (1-115)||(6854380-6854494)
chr1 (1-115)||(6865093-6865207)
chr1 (168-243)||(19719016-19719091)
chr1 (168-243)||(6864905-6864980)
chr1 (115-171)||(6865007-6865063)
[»] chr2 (6 HSPs)
chr2 (1-115)||(29492769-29492883)
chr2 (1-115)||(29497179-29497293)
chr2 (115-232)||(29497032-29497149)
chr2 (1-115)||(24355018-24355132)
chr2 (4-115)||(6980349-6980460)
chr2 (1-112)||(11964004-11964115)
[»] chr3 (3 HSPs)
chr3 (1-115)||(7340480-7340593)
chr3 (1-115)||(11013708-11013822)
chr3 (1-115)||(11008702-11008816)
[»] chr4 (2 HSPs)
chr4 (1-115)||(1970343-1970459)
chr4 (17-115)||(13425072-13425173)


Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 48429382 - 48429496
Alignment:
Q  1 ttattttctagtcaaatctagagaattccattgtcatttttccaatgtaacaattttctaggctagtctaagagaacattaattgtattctctctataaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48429382 ttattttctagtcaaatctagagaattccattgtcatttttccaatgtaacaattttctaggctagtctaagagaacattaattgtattctctctataaa 48429481  T
Q  101 aaccagcctttggct 115  Q
    |||||||||||||||    
T  48429482 aaccagcctttggct 48429496  T

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Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 37770866 - 37770975
Alignment:
Q  1 ttattttctagtcaaatctagagaattccat--tgtcatttttccaatgtaacaattttctaggctagtctaagagaacattaattgtattctctctata 98  Q
    ||||| |||||| || |||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37770866 ttattctctagttaagtctagagaattccatcatgtcatttttccaatgtaacaattttctaggctagtctaggagaacattaattgtattctctctata 37770965  T
Q  99 aaaaccagcc 108  Q
    ||||||||||    
T  37770966 aaaaccagcc 37770975  T

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Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 48426712 - 48426787
Alignment:
Q  168 gtaattgtaggtacttgtgttgtacctctattaccaagtatatcaccactgtgtgtccgatcaccatcctatgcta 243  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48426712 gtaattataggtacttgtgttgtacctctattaccaagtatatcaccactgtgtgtccgatcaccatcctatgcta 48426787  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 48426627 - 48426683
Alignment:
Q  115 ttatctttcaatatggcatcagagctcccggtgtttgggggtctcgcttccgcgtaa 171  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  48426627 ttatctttcaatatggcatcagaactcccggtgtttgggggtcttgcttccgcgtaa 48426683  T

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Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 6854494 - 6854380
Alignment:
Q  1 ttattttctagtcaaatctagagaattccattgtcatttttccaatgtaacaattttctaggctagtctaagagaacattaattgtattctctctataaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6854494 ttattttctagtcaaatctagagaattccattgtcatttttccaatgtaacaattttctaggctagtctaagagaacattaattgtattctctctataaa 6854395  T
Q  101 aaccagcctttggct 115  Q
    |||||||||||||||    
T  6854394 aaccagcctttggct 6854380  T

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Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 6865207 - 6865093
Alignment:
Q  1 ttattttctagtcaaatctagagaattccattgtcatttttccaatgtaacaattttctaggctagtctaagagaacattaattgtattctctctataaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6865207 ttattttctagtcaaatctagagaattccattgtcattttttcaatgtaacaattttctaggctagtctaagagaacattaattgtattctctctataaa 6865108  T
Q  101 aaccagcctttggct 115  Q
    |||||||||||||||    
T  6865107 aaccagcctttggct 6865093  T

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Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 19719091 - 19719016
Alignment:
Q  168 gtaattgtaggtacttgtgttgtacctctattaccaagtatatcaccactgtgtgtccgatcaccatcctatgcta 243  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  19719091 gtaattataggtacttgtgttgtacctctattaccaagtatatcaccactgtgtgtccgatcaacatcctatgcta 19719016  T

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Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 6864980 - 6864905
Alignment:
Q  168 gtaattgtaggtacttgtgttgtacctctattaccaagtatatcaccactgtgtgtccgatcaccatcctatgcta 243  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  6864980 gtaattataggtacttgtgttgtacctctattaccaagtatatcaccactgtatgtccgatcaccattctatgcta 6864905  T

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Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 6865063 - 6865007
Alignment:
Q  115 ttatctttcaatatggcatcagagctcccggtgtttgggggtctcgcttccgcgtaa 171  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6865063 ttatctttcaatatggtatcagagctcccggtgtttgggggtctcgcttccgcgtaa 6865007  T

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Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 29492883 - 29492769
Alignment:
Q  1 ttattttctagtcaaatctagagaattccattgtcatttttccaatgtaacaattttctaggctagtctaagagaacattaattgtattctctctataaa 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29492883 ttattttctagtcaaatctagagaatttcattgtcatttttccaatgtaacaattttctaggctagtctaagagaacattaattgtattctctctataaa 29492784  T
Q  101 aaccagcctttggct 115  Q
    |||||||||||||||    
T  29492783 aaccagcctttggct 29492769  T

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Target: chr2; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 29497293 - 29497179
Alignment:
Q  1 ttattttctagtcaaatctagagaattccattgtcatttttccaatgtaacaattttctaggctagtctaagagaacattaattgtattctctctataaa 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29497293 ttattttctagtcaaatctagagaatttcattgtcatttttccaatgtaacaattttctaggctagtctaagagaacattaattgtattctctctataaa 29497194  T
Q  101 aaccagcctttggct 115  Q
    |||||||||||||||    
T  29497193 aaccagcctttggct 29497179  T

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Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 115 - 232
Target Start/End: Complemental strand, 29497149 - 29497032
Alignment:
Q  115 ttatctttcaatatggcatcagagctcccggtgtttgggggtctcgcttccgcgtaattgtaggtacttgtgttgtacctctattaccaagtatatcacc 214  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |    
T  29497149 ttatctttcaatatggcatcagagctcttggtgtttgggggtctcgcttccgcgtaattataggtacttatgttgtacctctattaccaagtatatcatc 29497050  T
Q  215 actgtgtgtccgatcacc 232  Q
    ||||||||||||||||||    
T  29497049 actgtgtgtccgatcacc 29497032  T

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Target: chr2; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 24355132 - 24355018
Alignment:
Q  1 ttattttctagtcaaatctagagaattccattgtcatttttccaatgtaacaattttctaggctagtctaagagaacattaattgtattctctctataaa 100  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  24355132 ttattttctagtcaagtctagagaattccattgttatttttccaatgtaacaagtttctaggctagtctaggagaacattaattgtattctctctataaa 24355033  T
Q  101 aaccagcctttggct 115  Q
    || ||||||||||||    
T  24355032 aaacagcctttggct 24355018  T

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Target: chr2; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 6980460 - 6980349
Alignment:
Q  4 ttttctagtcaaatctagagaattccattgtcatttttccaatgtaacaattttctaggctagtctaagagaacattaattgtattctctctataaaaac 103  Q
    |||||||||||| ||||||||||||| |||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6980460 ttttctagtcaagtctagagaattccgttgttatttttccaatgtaacaagtttctaggctagtctaggagaacattaattgtattctctctataaaaac 6980361  T
Q  104 cagcctttggct 115  Q
    ||||||||||||    
T  6980360 cagcctttggct 6980349  T

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Target: chr2; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 11964004 - 11964115
Alignment:
Q  1 ttattttctagtcaaatctagagaattccattgtcatttttccaatgtaacaattttctaggctagtctaagagaacattaattgtattctctctataaa 100  Q
    ||||||||||||||| |||||||||||||||| | |||||||||||||||||| |||||| |||||||||  ||||||||||||||||||||||||||||    
T  11964004 ttattttctagtcaagtctagagaattccattattatttttccaatgtaacaagtttctaagctagtctagaagaacattaattgtattctctctataaa 11964103  T
Q  101 aaccagcctttg 112  Q
    ||||||||||||    
T  11964104 aaccagcctttg 11964115  T

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Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 7340593 - 7340480
Alignment:
Q  1 ttattttctagtcaaatctagagaattccattgtcatttttccaatgtaacaattttctaggctagtctaagagaacattaattgtattctctctataaa 100  Q
    ||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7340593 ttattttctagtcaaatcttgagaatttcattgtcatttt-ccaatgtaacaattttctaggctagtctaagagaacattaattgtattctctctataaa 7340495  T
Q  101 aaccagcctttggct 115  Q
    |||||||||||||||    
T  7340494 aaccagcctttggct 7340480  T

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Target: chr3; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 11013708 - 11013822
Alignment:
Q  1 ttattttctagtcaaatctagagaattccattgtcatttttccaatgtaacaattttctaggctagtctaagagaacattaattgtattctctctataaa 100  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  11013708 ttattttctagtcaagtctagagaattccattgttatttttccaatgtaacaagtttctaggctagtctaggagaacattaattgtattctctctataaa 11013807  T
Q  101 aaccagcctttggct 115  Q
    |||||||||||||||    
T  11013808 aaccagcctttggct 11013822  T

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Target: chr3; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 11008702 - 11008816
Alignment:
Q  1 ttattttctagtcaaatctagagaattccattgtcatttttccaatgtaacaattttctaggctagtctaagagaacattaattgtattctctctataaa 100  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||| |||||||||||| || ||||||||||||||||||||||||||    
T  11008702 ttattttctagtcaagtctagagaattccattgttatttttccaatgtaacaagtttttaggctagtctaggaaaacattaattgtattctctctataaa 11008801  T
Q  101 aaccagcctttggct 115  Q
    || ||||||||||||    
T  11008802 aatcagcctttggct 11008816  T

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Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 1970343 - 1970459
Alignment:
Q  1 ttattttctagtcaaatctagagaattccatt--gtcatttttccaatgtaacaattttctaggctagtctaagagaacattaattgtattctctctata 98  Q
    ||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1970343 ttattttctagtcaagtctagagaattccattatgtcatttttccaatgtaacaattttctagactagtctaagagaacattaattgtattctctctata 1970442  T
Q  99 aaaaccagcctttggct 115  Q
    |||||||||| ||||||    
T  1970443 aaaaccagcccttggct 1970459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 13425173 - 13425072
Alignment:
Q  17 tctagagaattccatt--gtcattttt-ccaatgtaacaattttctaggctagtctaagagaacattaattgtattctctctataaaaaccagcctttgg 113  Q
    ||||||||||||||||  ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13425173 tctagagaattccattatgtcattttttccaatgtaacagttttctaggctagtctaagagaacattaattgtattctctctataaaaaccagcctttgg 13425074  T
Q  114 ct 115  Q
    ||    
T  13425073 ct 13425072  T

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