View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19488_low_44 (Length: 242)
Name: NF19488_low_44
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19488_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 49 - 209
Target Start/End: Complemental strand, 15845142 - 15844982
Alignment:
| Q |
49 |
gcaagaacgtgcaaggcaggaagttttgcaagtttttgggaaccaaaatccaaacatcgaaggattaagtcaacttaaaactgtatgtattacttactct |
148 |
Q |
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| T |
15845142 |
gcaagaacgtgcaaggcaggaagttttgcaagtttttgggaaccaaaatccaaacagcgaaggattaagtcaacttaaaactgtatgtattacttactct |
15845043 |
T |
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| Q |
149 |
tatgttcaaattacaaatcaaatttcaaatgatcttggcacataaagtttgtatctatctc |
209 |
Q |
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| T |
15845042 |
tatgttcaaattacaaatcaaatttcaaatgatcttggcacataaagtttgtatctatctc |
15844982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 49 - 139
Target Start/End: Complemental strand, 15866042 - 15865952
Alignment:
| Q |
49 |
gcaagaacgtgcaaggcaggaagttttgcaagtttttgggaaccaaaatccaaacatcgaaggattaagtcaacttaaaactgtatgtatt |
139 |
Q |
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| T |
15866042 |
gcaagcacgtgcaaggcaggaagttttgcaagtttttgggaaccaaaatccaaacatcgaaggattaaatcaacttaaaattgtatgtatt |
15865952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 15852349 - 15852260
Alignment:
| Q |
49 |
gcaagaacgtgcaaggcaggaagttttgcaagtttttgggaaccaaaatccaaacatcgaaggattaagtcaacttaaaactgtatgtat |
138 |
Q |
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| T |
15852349 |
gcaagaacgtgcaaggcaggaagttttgcaagtttttgggaaccaaaatccaaacttcgaaggactaagtcaacttaaaattgtacgtat |
15852260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 49 - 139
Target Start/End: Complemental strand, 15859336 - 15859246
Alignment:
| Q |
49 |
gcaagaacgtgcaaggcaggaagttttgcaagtttttgggaaccaaaatccaaacatcgaaggattaagtcaacttaaaactgtatgtatt |
139 |
Q |
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| T |
15859336 |
gcaagcacgtgcaagggaggaagttttgcaagtttttgggaaccaaaatcctaacaacgaaggattaagtcaacttaaaattgtatgtatt |
15859246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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