View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19488_low_5 (Length: 583)

Name: NF19488_low_5
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19488_low_5
NF19488_low_5
[»] chr5 (10 HSPs)
chr5 (7-568)||(36202780-36203333)
chr5 (90-268)||(29006218-29006398)
chr5 (161-280)||(9851621-9851740)
chr5 (94-250)||(11042983-11043139)
chr5 (280-434)||(29006447-29006603)
chr5 (462-524)||(9851319-9851381)
chr5 (523-569)||(2022659-2022705)
chr5 (174-231)||(15205199-15205256)
chr5 (457-545)||(29006660-29006747)
chr5 (238-271)||(28270773-28270806)
[»] chr8 (6 HSPs)
chr8 (92-281)||(28696261-28696450)
chr8 (86-260)||(12729135-12729309)
chr8 (271-428)||(12729344-12729502)
chr8 (432-569)||(44729228-44729359)
chr8 (432-512)||(12729541-12729621)
chr8 (458-510)||(28696007-28696059)
[»] chr3 (14 HSPs)
chr3 (91-280)||(52653523-52653712)
chr3 (272-439)||(52653728-52653896)
chr3 (91-231)||(50914636-50914776)
chr3 (270-432)||(33709782-33709945)
chr3 (94-280)||(33709572-33709752)
chr3 (271-429)||(40574317-40574477)
chr3 (432-524)||(52653924-52654016)
chr3 (160-255)||(16729628-16729721)
chr3 (270-382)||(31362294-31362407)
chr3 (92-158)||(2257455-2257521)
chr3 (89-138)||(23686022-23686071)
chr3 (89-138)||(24058259-24058308)
chr3 (432-524)||(33709981-33710072)
chr3 (528-569)||(52654010-52654051)
[»] chr4 (13 HSPs)
chr4 (91-281)||(24129520-24129710)
chr4 (92-258)||(20251147-20251312)
chr4 (97-281)||(48780039-48780222)
chr4 (121-272)||(1494959-1495110)
chr4 (125-264)||(1516526-1516664)
chr4 (92-185)||(122829-122922)
chr4 (316-429)||(20251408-20251523)
chr4 (182-256)||(1533060-1533134)
chr4 (523-569)||(18670541-18670587)
chr4 (459-524)||(48779734-48779799)
chr4 (121-168)||(1533134-1533180)
chr4 (523-569)||(3415610-3415656)
chr4 (313-434)||(24391830-24391951)
[»] chr2 (6 HSPs)
chr2 (89-264)||(34681294-34681469)
chr2 (111-270)||(14219075-14219233)
chr2 (277-377)||(14218942-14219043)
chr2 (456-487)||(30283756-30283787)
chr2 (223-269)||(14891601-14891647)
chr2 (528-569)||(16272142-16272183)
[»] chr7 (11 HSPs)
chr7 (97-272)||(12239809-12239983)
chr7 (85-279)||(1840394-1840589)
chr7 (275-428)||(12239628-12239782)
chr7 (110-377)||(24870206-24870478)
chr7 (456-524)||(12239497-12239565)
chr7 (120-200)||(34091727-34091806)
chr7 (147-210)||(24533212-24533275)
chr7 (270-353)||(24871385-24871468)
chr7 (523-569)||(5436988-5437034)
chr7 (432-481)||(24870567-24870616)
chr7 (531-569)||(37469116-37469154)
[»] chr6 (4 HSPs)
chr6 (94-280)||(28612324-28612508)
chr6 (277-434)||(28612144-28612303)
chr6 (432-515)||(11932104-11932187)
chr6 (523-569)||(28611988-28612034)
[»] chr1 (14 HSPs)
chr1 (270-428)||(49053745-49053905)
chr1 (270-434)||(49061325-49061491)
chr1 (91-264)||(49053554-49053713)
chr1 (162-268)||(17458239-17458345)
chr1 (90-152)||(49061133-49061195)
chr1 (107-269)||(50059269-50059430)
chr1 (432-524)||(49053944-49054036)
chr1 (223-280)||(10917415-10917470)
chr1 (523-569)||(48366509-48366555)
chr1 (528-569)||(44524481-44524522)
chr1 (432-524)||(49061524-49061616)
chr1 (233-280)||(52282180-52282226)
chr1 (523-569)||(29681291-29681337)
chr1 (182-264)||(49061211-49061293)
[»] scaffold0007 (3 HSPs)
scaffold0007 (90-281)||(217508-217689)
scaffold0007 (97-269)||(215646-215816)
scaffold0007 (277-428)||(217708-217861)


Alignment Details
Target: chr5 (Bit Score: 426; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 7 - 568
Target Start/End: Original strand, 36202780 - 36203333
Alignment:
Q  7 gcaacacagaaatga-atctcctttatatgcaattgaacgcataagaaaattgtacaaacagacacatgaacattggtgtattaattgtgagagaaattt 105  Q
    ||||||||||||||| ||||||||||||| ||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  36202780 gcaacacagaaatgacatctcctttatatacaattgaacacataagaaaatcgtacaaccagacacatgaacattggtgtattaattgtgagagaaattt 36202879  T
Q  106 tcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatcattcatgaacaaac 205  Q
    | ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  36202880 ttaaaatatatttgaaaagttgcaatggttaaaaagagaccttttagagaaaaggtgtaatgcttgacaattgaatcaatgtaaccattcatgaacaaac 36202979  T
Q  206 tcttttaataggttatttctcttcaccaaatgacataagtttctctataaatagagacactttggagacagaaaatcacattgctgtgagtctaaattct 305  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36202980 tcttttaaagggttatttctcttcaccaaatgacataagtttctctataaatagagacactttggagacagaaaatcacattggtgtgagtctaaattct 36203079  T
Q  306 gccgaaaattatactaaattattcgttctcttctttagtgtacgagagaa-ttgtcagaactttattttgtaagctaccgttgtcgatacacttgatgtg 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||  |||||||||||||||    
T  36203080 gccgaaaattatactaaattattcgttctcttctttagtgtacgagagaatttgtcagaactttattttgtaagctaccattgcagatacacttgatgtg 36203179  T
Q  405 aacgtgcaagtcacgtcaaggattctattgcatccggttggcataa-tggtggggggcgaatcgaacttaaaggttagtgtggcccacacacgccatgga 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| |    
T  36203180 aacgtgcaagtcacgtcaaggattctattgcatccggttggcataactggt-ggggacgaatcgaacttaaaggttagtgtggcccacacacgccatgaa 36203278  T
Q  504 atttatgtgcacaattcatcacaattcatcatgttcatctttatcatcttcttgatgaagttatt 568  Q
    |||||||||          |||||||||| ||||||||||| |||||||||||||||||||||||    
T  36203279 atttatgtg----------cacaattcattatgttcatcttcatcatcttcttgatgaagttatt 36203333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 90 - 268
Target Start/End: Original strand, 29006218 - 29006398
Alignment:
Q  90 attgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaa---agtgtaatgcttgacaattgaatcaatg 186  Q
    |||||||||||||||| ||||||||| || ||||||||||||  |||||| |||| |||||||| ||||   ||||||||| || || |||||| |||||    
T  29006218 attgtgagagaaatttccaaaatataattgaaaagttgcaataattaaaa-gagatcttttagaaaaaaaaaagtgtaatgttttacgattgaagcaatg 29006316  T
Q  187 taatcattcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataaatagagacacttt 268  Q
    ||| |||||||||||||| ||||||||  |||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  29006317 taaccattcatgaacaaaatcttttaaagggttgtttcccttcaccaaatgacataagtttctctataaatagagacacttt 29006398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 161 - 280
Target Start/End: Complemental strand, 9851740 - 9851621
Alignment:
Q  161 tgtaatgcttgacaattgaatcaatgtaatcattcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataaataga 260  Q
    |||| ||||||||||||||| |||| | | ||||||| |||||||||| | ||  |||||||||||||||||||| ||||||||||||||| ||||||||    
T  9851740 tgtattgcttgacaattgaagcaatctgaccattcataaacaaactctgtcaaatggttatttctcttcaccaaaagacataagtttctctgtaaataga 9851641  T
Q  261 gacactttggagacagaaaa 280  Q
    |||| ||||||| |||||||    
T  9851640 gacattttggaggcagaaaa 9851621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 94 - 250
Target Start/End: Complemental strand, 11043139 - 11042983
Alignment:
Q  94 tgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatcat 193  Q
    |||| |||||||||||||||||||| ||||||| ||  ||||||| | ||| ||||||||||||| |||||||| ||| | ||| ||||||| ||  |||    
T  11043139 tgagtgaaattttcaaaatatatttgaaaagtttcatcggttaaataaagatcttttagagaaaaggtgtaatgtttgtccatttaatcaatctagccat 11043040  T
Q  194 tcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctc 250  Q
    ||||||||||||||||| ||  ||||  || ||| ||||||| ||||| ||||||||    
T  11043039 tcatgaacaaactctttcaaagggttgattatctacaccaaaggacatgagtttctc 11042983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 434
Target Start/End: Original strand, 29006447 - 29006603
Alignment:
Q  280 atcacattgctgtgagtctaaattctgccgaaaattatactaaattattcgttctcttctttagtgtacgagagaa-ttgtcagaactttattttgt-aa 377  Q
    ||||||||  ||||||||||||||||||  ||||||||||||||| |||| |||| || | ||||| |||||| || ||| |||||||||||| ||| ||    
T  29006447 atcacattcttgtgagtctaaattctgctaaaaattatactaaatcattcattcttttttctagtgcacgagataagttgacagaactttattctgtaaa 29006546  T
Q  378 gctaccgttgtcgatacacttgatgtgaacgtgcaagtcacgtcaaggattctattg 434  Q
     ||| | ||| |||||| |||| |||||| ||| | |||| ||||||||||| ||||    
T  29006547 actaacattgacgatacgcttggtgtgaatgtgtatgtcatgtcaaggattccattg 29006603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 462 - 524
Target Start/End: Complemental strand, 9851381 - 9851319
Alignment:
Q  462 gaatcgaacttaaaggttagtgtggcccacacacgccatggaatttatgtgcacaattcatca 524  Q
    |||| |||| |||| ||||||||| |||||||||||  |||||||||||||||||||||||||    
T  9851381 gaattgaacctaaatgttagtgtgtcccacacacgctttggaatttatgtgcacaattcatca 9851319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 523 - 569
Target Start/End: Complemental strand, 2022705 - 2022659
Alignment:
Q  523 cacaattcatcatgttcatctttatcatcttcttgatgaagttattg 569  Q
    |||| ||||||||||||||||| |||||||||||||| |||||||||    
T  2022705 cacatttcatcatgttcatcttcatcatcttcttgatcaagttattg 2022659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 15205199 - 15205256
Alignment:
Q  174 aattgaatcaatgtaatcattcatgaacaaactcttttaataggttatttctcttcac 231  Q
    ||||||| ||||||||||||||||||||||||||||  ||  |||||||||| |||||    
T  15205199 aattgaagcaatgtaatcattcatgaacaaactcttacaaatggttatttctattcac 15205256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 545
Target Start/End: Original strand, 29006660 - 29006747
Alignment:
Q  457 ggggcgaatcgaacttaaaggttagtgtggcccacacacgccatggaatttatgtgcacaattcatcacaattcatcatgttcatcttt 545  Q
    |||||||||||||| |||| ||||||||| | |||||||||  || |||||||||||||  |||||||  ||||||| || ||||||||    
T  29006660 ggggcgaatcgaacctaaaagttagtgtgtctcacacacgctttgaaatttatgtgcactcttcatca-tattcatcttgatcatcttt 29006747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 271
Target Start/End: Complemental strand, 28270806 - 28270773
Alignment:
Q  238 acataagtttctctataaatagagacactttgga 271  Q
    ||||||||||||||||||||||||| ||||||||    
T  28270806 acataagtttctctataaatagagatactttgga 28270773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 5e-48; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 92 - 281
Target Start/End: Complemental strand, 28696450 - 28696261
Alignment:
Q  92 tgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatc 191  Q
    |||||||| |||||| ||||||| |   |||||||||||||| |||| ||||| ||||||||||||| ||||||||||| ||||||||| |||||||| |    
T  28696450 tgtgagagtaatttttaaaatatttcgaaaaagttgcaatgggtaaatagagatcttttagagaaaatgtgtaatgcttaacaattgaagcaatgtaacc 28696351  T
Q  192 attcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataaatagagacactttggagacagaaaat 281  Q
    |||||||||||||||||| |||  || | |||||||||||||||  ||||||||||||| ||||||||||||||||||||  ||||||||    
T  28696350 attcatgaacaaactcttctaaagggatgtttctcttcaccaaagaacataagtttctccataaatagagacactttggatgcagaaaat 28696261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 86 - 260
Target Start/End: Original strand, 12729135 - 12729309
Alignment:
Q  86 attaattgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaat 185  Q
    |||| ||||||||||||||| ||||||||||||  |||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||| ||||    
T  12729135 attatttgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaatagagaccttttagagaaaaggtgtaatgctcgacaattgaagcaat 12729234  T
Q  186 gtaatcattcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataaataga 260  Q
     ||| ||||||||| ||||||||| |||   ||| ||||||||||||| | ||||||| ||||||| ||||||||    
T  12729235 ataaccattcatgagcaaactcttctaaagagttgtttctcttcaccacaggacataaatttctctgtaaataga 12729309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 271 - 428
Target Start/End: Original strand, 12729344 - 12729502
Alignment:
Q  271 agacagaaaatcacattgctgtgagtctaaattctgccgaaaattatactaaattattcgttctcttctttagtgtacgagag-aattgtcagaacttta 369  Q
    |||||||||||||||||| |||| ||| |||||||||||||||||||||||||| |||| |||| |||| ||||| ||||||| ||||| ||||||||||    
T  12729344 agacagaaaatcacattgttgtgtgtcaaaattctgccgaaaattatactaaataattctttcttttctctagtgcacgagagaaattgacagaacttta 12729443  T
Q  370 ttttgtaagctaccgttgtcgatacacttgatgtgaacgtgcaagtcacgtcaaggatt 428  Q
    ||  |||| ||||  |||||||||  |||| |||||| |||||||||| ||||||||||    
T  12729444 ttcagtaaactacaattgtcgatatgcttggtgtgaatgtgcaagtcatgtcaaggatt 12729502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 569
Target Start/End: Original strand, 44729228 - 44729359
Alignment:
Q  432 ttgcatccggttggcataatggtggggggcgaatcgaacttaaaggttagtgtggcccacacacgccatggaatttatgtgcacaattcatcacaattca 531  Q
    |||||||||||||||||||      |||| |||| |||| |||||||||||||  |||||||||||  ||||||||||||||||  |||||||           
T  44729228 ttgcatccggttggcataactcgcaggggtgaattgaacataaaggttagtgtatcccacacacgctttggaatttatgtgcactcttcatca------t 44729321  T
Q  532 tcatgttcatctttatcatcttcttgatgaagttattg 569  Q
    |||||||||| || || ||||||||||| |||||||||    
T  44729322 tcatgttcattttcattatcttcttgatcaagttattg 44729359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 432 - 512
Target Start/End: Original strand, 12729541 - 12729621
Alignment:
Q  432 ttgcatccggttggcataa-tggtggggggcgaatcgaacttaaaggttagtgtggcccacacacgccatggaatttatgtg 512  Q
    ||||||||||||||||||| |||||| || ||||||| || |||||||||||||| ||||||||| |  ||||||| |||||    
T  12729541 ttgcatccggttggcataactggtggagg-cgaatcgtacctaaaggttagtgtgtcccacacactctttggaattcatgtg 12729621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 510
Target Start/End: Complemental strand, 28696059 - 28696007
Alignment:
Q  458 gggcgaatcgaacttaaaggttagtgtggcccacacacgccatggaatttatg 510  Q
    ||||||||| ||| |||| ||||||||| |||||||||||  |||||||||||    
T  28696059 gggcgaatcaaacctaaaagttagtgtgtcccacacacgctttggaatttatg 28696007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 91 - 280
Target Start/End: Original strand, 52653523 - 52653712
Alignment:
Q  91 ttgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaat 190  Q
    ||||||||||||||| ||||||||||||  |||||||||||| ||||| | | ||||||||| ||||| ||||| || |||||||||||  ||||||||     
T  52653523 ttgtgagagaaatttccaaaatatatttggaaagttgcaatgattaaataaataccttttagtgaaaaggtgtattgtttgacaattgatgcaatgtaac 52653622  T
Q  191 cattcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataaatagagacactttggagacagaaaa 280  Q
    |||||||||||||||||||||||  |||| | ||||||||||||| |||| ||||||||||||| | | ||||||||||||| |||||||    
T  52653623 cattcatgaacaaactcttttaaatggttgtgtctcttcaccaaaggacacaagtttctctatagacaaagacactttggaggcagaaaa 52653712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 272 - 439
Target Start/End: Original strand, 52653728 - 52653896
Alignment:
Q  272 gacagaaaatcacattgctgtgagtctaaattctgccgaaaattatactaaattattcgttctcttctttagtgtacgag-agaattgtcagaactttat 370  Q
    |||||||||| |||||| ||||||| |||||||||| |||||||||||||||| |||| | || |||| ||||| ||||| | ||||| |||||||||||    
T  52653728 gacagaaaattacattgttgtgagtttaaattctgctgaaaattatactaaatcattcttacttttctctagtgcacgaggaaaattgacagaactttat 52653827  T
Q  371 tttgtaagctaccgttgtcgatacacttgatgtgaacgtgcaagtcacgtcaaggattctattgcatcc 439  Q
    | ||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||| |||| ||||    
T  52653828 tctgtaaactaccattgtcgatacacttgatgtgaatgtgcaagtcacgtcaaggattccattgtatcc 52653896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 91 - 231
Target Start/End: Complemental strand, 50914776 - 50914636
Alignment:
Q  91 ttgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaat 190  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||| ||||| ||     
T  50914776 ttgttagagaaattttcaaaatatatttgaaaagttgcaatggttaaatagagaccttttagagtaaaggtgtaatgcttgacaattgaagcaatgcaac 50914677  T
Q  191 cattcatg-aacaaactcttttaataggttatttctcttcac 231  Q
    |||||||| |||||||||||  || ||||| |||||||||||    
T  50914676 cattcatgaaacaaactcttccaa-aggttttttctcttcac 50914636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 270 - 432
Target Start/End: Original strand, 33709782 - 33709945
Alignment:
Q  270 gagacagaaaatcacattgctgtgagtctaaattctgccgaaaattatactaaattattcgttctcttctttagtgtacgagagaatt-gtcagaacttt 368  Q
    |||| |||| ||||||||   ||||||||||||| |||||||||||||||||||| |||| |||| |||| ||||| || |||||||| | |||||||||    
T  33709782 gagatagaatatcacattctggtgagtctaaattttgccgaaaattatactaaatcattctttcttttctctagtgcaccagagaatttgacagaacttt 33709881  T
Q  369 attttgtaagctaccgttgtcgatacacttgatgtgaacgtgcaagtcacgtcaaggattctat 432  Q
    ||| ||||| ||||| |||||||||| |||| |||||| |||||||||||||||||||||||||    
T  33709882 attctgtaaactaccattgtcgatacgcttggtgtgaatgtgcaagtcacgtcaaggattctat 33709945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 94 - 280
Target Start/End: Original strand, 33709572 - 33709752
Alignment:
Q  94 tgagagaaattttcaaaata---tatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaa--gtgtaatgcttgacaattgaatcaatgta 188  Q
    |||||||||||| |||||||   |||||  ||||||||||||||||||| ||||||||||| | |||||  ||||||||||| ||||||||| |||||||    
T  33709572 tgagagaaatttccaaaataatatatttggaaagttgcaatggttaaaa-gagaccttttataaaaaaaaggtgtaatgctttacaattgaagcaatgta 33709670  T
Q  189 atcattcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataaatagagacactttggagacagaaaa 280  Q
    |          ||||| ||||| ||  |||| |||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  33709671 a----------acaaaatctttcaaagggttctttcccttcaccaaaggacataagtttctctataaatagagacactttggaggcagaaaa 33709752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 271 - 429
Target Start/End: Complemental strand, 40574477 - 40574317
Alignment:
Q  271 agacagaaaatcacattgctgtgagtctaaattctgccgaaaattatactaaattattcgttctcttctttagtgtacgagag-aattgtcagaacttta 369  Q
    ||||| |||||||||||  |||||||| |||||||||||||||| ||| ||||| |||| |||| |||| ||||| ||||||| ||||| ||||||||||    
T  40574477 agacacaaaatcacattcttgtgagtcaaaattctgccgaaaataatattaaatcattctttcttttctctagtgcacgagagaaattgacagaacttta 40574378  T
Q  370 ttttgtaagctaccgttg-tcgatacacttgatgtgaacgtgcaagtcacgtcaaggattc 429  Q
    || ||||| ||| | ||| | ||||| |||  |||||| |||||||||||||||| |||||    
T  40574377 ttctgtaaactatcattgattgatacgcttcgtgtgaatgtgcaagtcacgtcaaagattc 40574317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 432 - 524
Target Start/End: Original strand, 52653924 - 52654016
Alignment:
Q  432 ttgcatccggttggcataa-tggtggggggcgaatcgaacttaaaggttagtgtggcccacacacgccatggaatttatgtgcacaattcatca 524  Q
    ||||||||||||||||||| ||||| ||| ||||| |||| |||||||||||||| |||||||||||  ||||||||||||||||| |||||||    
T  52653924 ttgcatccggttggcataactggtgaggg-cgaattgaacctaaaggttagtgtgtcccacacacgctttggaatttatgtgcacacttcatca 52654016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 160 - 255
Target Start/End: Original strand, 16729628 - 16729721
Alignment:
Q  160 gtgtaatgcttgacaattgaatcaatgtaatcattcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataa 255  Q
    ||||||| |||||| |||||| ||||||||| ||||||||| |||||||||||| | ||| ||||||||||||||| ||||| | |||||||||||    
T  16729628 gtgtaatacttgactattgaagcaatgtaataattcatgaagaaactcttttaaga-gttgtttctcttcaccaaaagacat-actttctctataa 16729721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 382
Target Start/End: Complemental strand, 31362407 - 31362294
Alignment:
Q  270 gagacagaaaatcacattgctgtgagtctaaattctgccgaaaattatactaaattattcgttctcttctttagtgtacga-gagaattgtcagaacttt 368  Q
    |||||| |||||||||||  |||||||| |||||||| ||||||| |||||||||| ||  || | || ||||||| |||| || ||||| |||||||||    
T  31362407 gagacaaaaaatcacattcttgtgagtcaaaattctgtcgaaaataatactaaatttttttttattttttttagtgcacgaggaaaattgacagaacttt 31362308  T
Q  369 attttgtaagctac 382  Q
    ||||||||| ||||    
T  31362307 attttgtaaactac 31362294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 2257521 - 2257455
Alignment:
Q  92 tgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaa 158  Q
    ||||| ||||||||  ||||||||||| ||||||||||||| ||||| ||||||| |||||||||||    
T  2257521 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccatttagagaaaa 2257455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 23686022 - 23686071
Alignment:
Q  89 aattgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaa 138  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||||||||    
T  23686022 aattgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaa 23686071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 24058259 - 24058308
Alignment:
Q  89 aattgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaa 138  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||||||||    
T  24058259 aattgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaa 24058308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 432 - 524
Target Start/End: Original strand, 33709981 - 33710072
Alignment:
Q  432 ttgcatccggttggcataa-tggtggggggcgaatcgaacttaaaggttagtgtggcccacacacgccatggaatttatgtgcacaattcatca 524  Q
    ||||||||||||| ||||| |||||| ||  ||||||| | |||||||||||||| |||||||||||  ||||||||| ||||||| |||||||    
T  33709981 ttgcatccggttgacataactggtggaggt-gaatcgatcctaaaggttagtgtgtcccacacacgctttggaattta-gtgcacacttcatca 33710072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 528 - 569
Target Start/End: Original strand, 52654010 - 52654051
Alignment:
Q  528 ttcatcatgttcatctttatcatcttcttgatgaagttattg 569  Q
    |||||||||||||| || |||||||||||||| |||||||||    
T  52654010 ttcatcatgttcattttcatcatcttcttgatcaagttattg 52654051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 8e-44; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 91 - 281
Target Start/End: Complemental strand, 24129710 - 24129520
Alignment:
Q  91 ttgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaat 190  Q
    |||||||||||||| |||||||||||||  ||||| |||||||||||| | || | |||| ||| ||| ||||| ||||||| ||||||| ||||||||     
T  24129710 ttgtgagagaaattatcaaaatatatttagaaagtcgcaatggttaaatataggctttttggaggaaaggtgtattgcttgataattgaagcaatgtaac 24129611  T
Q  191 cattcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataaatagagacactttggagacagaaaat 281  Q
    |||||||||||||||||||  ||  ||||||||  ||| ||||||||||||||||||||||||||||||||||||| ||||| || |||||    
T  24129610 cattcatgaacaaactcttccaaatggttattttccttaaccaaatgacataagtttctctataaatagagacactctggaggcaaaaaat 24129520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 92 - 258
Target Start/End: Original strand, 20251147 - 20251312
Alignment:
Q  92 tgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatc 191  Q
    ||||||||||||||| |||||||||||  ||||||||||| |||||| ||||| ||||||||||||||||||| || |||| ||||||| ||||||||      
T  20251147 tgtgagagaaatttttaaaatatatttggaaagttgcaattgttaaatagagatcttttagagaaaaagtgtattgtttgataattgaaacaatgtaact 20251246  T
Q  192 attcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataaata 258  Q
    |||||||||| |||||| ||||   ||| ||| |||| |||||| ||||||||||||||||||||||    
T  20251247 attcatgaac-aactctcttaaatagttgtttttctttaccaaaggacataagtttctctataaata 20251312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 97 - 281
Target Start/End: Complemental strand, 48780222 - 48780039
Alignment:
Q  97 gagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatcattca 196  Q
    ||||||||||||||||||||||  |||||||||||| ||||| | ||| ||||||||||||| || ||||| |||||||||||| |||| |||  |||||    
T  48780222 gagaaattttcaaaatatatttggaaagttgcaatgattaaaca-agatcttttagagaaaaggtataatgtttgacaattgaagcaatataactattca 48780124  T
Q  197 tgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataaatagagacactttggagacagaaaat 281  Q
    |||| ||| |||||| | ||||| ||||||| ||||||| ||| | ||||| |||||||||| ||| ||||||||| ||||||||    
T  48780123 tgaataaattcttttcaaaggttgtttctctacaccaaaagacttgagtttatctataaataaagatactttggaggcagaaaat 48780039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 121 - 272
Target Start/End: Complemental strand, 1495110 - 1494959
Alignment:
Q  121 aaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatcattcatgaacaaactcttttaataggtta 220  Q
    ||||||||||||||||||| |||||| ||||||||||| |||||| |||| ||| ||||| |||| ||| |||||||||||||| |  ||| | |||||     
T  1495110 aaagttgcaatggttaaaa-gagaccatttagagaaaaggtgtaaagctttacagttgaagcaatataaccattcatgaacaaaattctttcaaaggttt 1495012  T
Q  221 -tttctcttcaccaaatgacataagtttctctataaatagagacactttggag 272  Q
     ||||  |||||||||||||||||||||||||||||| ||||||| |||||||    
T  1495011 gtttccgttcaccaaatgacataagtttctctataaaaagagacattttggag 1494959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 125 - 264
Target Start/End: Complemental strand, 1516664 - 1516526
Alignment:
Q  125 ttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatcattcatgaacaaactcttttaataggttatttc 224  Q
    ||||||||||||||| ||||| |||||||||||| ||||| ||||| | || |||  |||| ||| |||||||||||||| ||||| ||  |||||||||    
T  1516664 ttgcaatggttaaaa-gagacattttagagaaaaggtgtagtgctttagaaatgacgcaatataaccattcatgaacaaaatctttcaaagggttatttc 1516566  T
Q  225 tcttcaccaaatgacataagtttctctataaatagagaca 264  Q
      |||||||||||||||||||||||||| |||||||||||    
T  1516565 cgttcaccaaatgacataagtttctctagaaatagagaca 1516526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 92 - 185
Target Start/End: Original strand, 122829 - 122922
Alignment:
Q  92 tgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaat 185  Q
    |||||||||||||| |||| ||||||| |||||||||||| |||||| ||| || |||||||||||| ||||| ||||||||||||||| ||||    
T  122829 tgtgagagaaatttccaaagtatatttgaaaagttgcaatagttaaatagaaacattttagagaaaatgtgtattgcttgacaattgaaacaat 122922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 316 - 429
Target Start/End: Original strand, 20251408 - 20251523
Alignment:
Q  316 atactaaattattcgttctcttctttagtgtacgagagaa-ttgtcagaactttattttgtaagctaccgttg-tcgatacacttgatgtgaacgtgcaa 413  Q
    ||||||||| |||  |||| |||| ||||| ||||||||| ||| |||||||||||| ||||| ||| | ||| ||||||||||||||||||| || |||    
T  20251408 atactaaatcattatttcttttctgtagtgcacgagagaaattgacagaactttattatgtaaactatcattgatcgatacacttgatgtgaatgtacaa 20251507  T
Q  414 gtcacgtcaaggattc 429  Q
    | ||| |||| |||||    
T  20251508 ggcacatcaatgattc 20251523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 1533134 - 1533060
Alignment:
Q  182 caatgtaatcattcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataaa 256  Q
    |||| ||| |||| ||||||||| ||||| ||  |||| |||| ||||| |||||||||||||||||||||||||    
T  1533134 caatataaccatttatgaacaaaatctttcaaagggttgtttcccttcatcaaatgacataagtttctctataaa 1533060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 523 - 569
Target Start/End: Complemental strand, 18670587 - 18670541
Alignment:
Q  523 cacaattcatcatgttcatctttatcatcttcttgatgaagttattg 569  Q
    |||| |||||||||||||||||||||||||||||| | |||||||||    
T  18670587 cacacttcatcatgttcatctttatcatcttcttggtcaagttattg 18670541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 459 - 524
Target Start/End: Complemental strand, 48779799 - 48779734
Alignment:
Q  459 ggcgaatcgaacttaaaggttagtgtggcccacacacgccatggaatttatgtgcacaattcatca 524  Q
    |||||||||||| |||||||||||||  |||||||||||  || ||||||| |||||| |||||||    
T  48779799 ggcgaatcgaacataaaggttagtgtatcccacacacgctttgaaatttatatgcacacttcatca 48779734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 1533180 - 1533134
Alignment:
Q  121 aaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgc 168  Q
    ||||||||||||||||||| ||||||| |||||||||| |||||||||    
T  1533180 aaagttgcaatggttaaaa-gagacctattagagaaaaggtgtaatgc 1533134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 523 - 569
Target Start/End: Original strand, 3415610 - 3415656
Alignment:
Q  523 cacaattcatcatgttcatctttatcatcttcttgatgaagttattg 569  Q
    |||| ||||||||||||||||| |||||||||||| | |||||||||    
T  3415610 cacacttcatcatgttcatcttcatcatcttcttggtcaagttattg 3415656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 434
Target Start/End: Original strand, 24391830 - 24391951
Alignment:
Q  313 attatactaaattattcgttctcttctttagtgtacgagag-aattgtcagaactttattttgtaagctaccgttgtcgatacacttgatgtgaacgtgc 411  Q
    |||||||||||| |||| |||| |||| ||||| | ||||| ||||| || ||||||||| ||||| ||| | ||||||||||  ||| |||| | ||||    
T  24391830 attatactaaatcattctttcttttctctagtgcatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtg-atgtgc 24391928  T
Q  412 aagtcacgtcaaggattctattg 434  Q
    |||||||  ||||||||| ||||    
T  24391929 aagtcacaccaaggattccattg 24391951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 5e-42; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 89 - 264
Target Start/End: Complemental strand, 34681469 - 34681294
Alignment:
Q  89 aattgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgta 188  Q
    ||||||||||||||||||||||||||||||  || ||||||||||||||| | | |||||||||||||||||||||||| |||||||||||| ||||||     
T  34681469 aattgtgagagaaattttcaaaatatatttggaatgttgcaatggttaaacataaaccttttagagaaaaagtgtaatgtttgacaattgaagcaatgtt 34681370  T
Q  189 atcattcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataaatagagaca 264  Q
    | |||| ||||||||||||||  ||   ||| ||| ||||| ||||| ||||||| ||||||||||||||| ||||    
T  34681369 accattgatgaacaaactcttcaaaagagttgtttttcttccccaaaagacataaatttctctataaatagggaca 34681294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 111 - 270
Target Start/End: Complemental strand, 14219233 - 14219075
Alignment:
Q  111 atatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatcattcatgaacaaactcttt 210  Q
    |||||||| ||| |||||||| |||||| ||| | |||| |||||||| ||| ||||||| ||||||||| ||||||||||  |||||||| ||||||||    
T  14219233 atatatttgaaatgttgcaatagttaaatagaaatcttt-agagaaaatgtgcaatgctttacaattgaagcaatgtaatcggtcatgaaccaactcttt 14219135  T
Q  211 taataggttatttctcttcaccaaatgacataagtttctctataaatagagacactttgg 270  Q
     ||   ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14219134 caaagtgttgtttctcttcaccaaatggcataagtttctctataaatagagacactttgg 14219075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 377
Target Start/End: Complemental strand, 14219043 - 14218942
Alignment:
Q  277 aaaatcacattgctgtgagtctaaattctgccgaaaattatactaaattattcgttctcttctttagtgtacga-gagaattgtcagaactttattttgt 375  Q
    |||||||||||  |||||||| ||||| |||  ||||| ||||||||| |||| |||| |||| ||||| |||| || |||||  |||||||||||||||    
T  14219043 aaaatcacattattgtgagtcaaaattatgctaaaaataatactaaatcattctttcttttctctagtgcacgaggaaaattgaaagaactttattttgt 14218944  T
Q  376 aa 377  Q
    ||    
T  14218943 aa 14218942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 487
Target Start/End: Original strand, 30283756 - 30283787
Alignment:
Q  456 gggggcgaatcgaacttaaaggttagtgtggc 487  Q
    ||||||||||||||||||||||||||||||||    
T  30283756 gggggcgaatcgaacttaaaggttagtgtggc 30283787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 14891601 - 14891647
Alignment:
Q  223 tctcttcaccaaatgacataagtttctctataaatagagacactttg 269  Q
    ||||| |||||||||||||| |||| ||||||| |||||||||||||    
T  14891601 tctctgcaccaaatgacatatgtttttctataagtagagacactttg 14891647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 528 - 569
Target Start/End: Complemental strand, 16272183 - 16272142
Alignment:
Q  528 ttcatcatgttcatctttatcatcttcttgatgaagttattg 569  Q
    |||||||||||||||||||||||||||||  | |||||||||    
T  16272183 ttcatcatgttcatctttatcatcttcttagtcaagttattg 16272142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 97 - 272
Target Start/End: Complemental strand, 12239983 - 12239809
Alignment:
Q  97 gagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatcattca 196  Q
    ||||||||| |||||||||||| ||| ||||||||||||||| | ||||||||||| ||||||||||| ||||||||||||||  |||||||| ||||||    
T  12239983 gagaaatttccaaaatatatttgaaa-gttgcaatggttaaagaaagaccttttagtgaaaaagtgtattgcttgacaattgatgcaatgtaaccattca 12239885  T
Q  197 tgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataaatagagacactttggag 272  Q
    |||||||||||||| ||  ||||    ||||| | |||| || ||||||||||||||||||| |||||||||||||    
T  12239884 tgaacaaactctttcaaatggttgcggctcttgatcaaaggatataagtttctctataaataaagacactttggag 12239809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 85 - 279
Target Start/End: Original strand, 1840394 - 1840589
Alignment:
Q  85 tattaattgtgagagaaattttcaaaatata--tttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatc 182  Q
    ||||||||||||||| |||||| ||||||||  ||| |||||||||||||||||| | ||||||||||||  |||  ||||||| ||||| |||| ||      
T  1840394 tattaattgtgagagtaatttttaaaatataaatttgaaaagttgcaatggttaaga-gagaccttttagt-aaatggtgtaattcttgataattcaagt 1840491  T
Q  183 aatgtaatcattcatgaacaaactcttttaataggttatttctcttcaccaaatg-acataagtttctctataaatagagacactttggagacagaaa 279  Q
    | ||||| |||||||||||||| |||| ||| | ||| | | |||||| |||| | ||||||||||||||||||||||||||| ||||||| ||||||    
T  1840492 attgtaaccattcatgaacaaattcttctaaaaagttgtctttcttcatcaaaaggacataagtttctctataaatagagacattttggaggcagaaa 1840589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 275 - 428
Target Start/End: Complemental strand, 12239782 - 12239628
Alignment:
Q  275 agaaaatcacattgctgtgagtctaaattctgccgaaaattatactaaattattcgttctcttctttagtgtacgagagaa-ttgtcagaactttatttt 373  Q
    |||||||||||||| |||| ||   ||||||||||||||| ||| |||||||||| ||||  ||| |||| ||| ||| || ||| || ||||||||| |    
T  12239782 agaaaatcacattgttgtgtgttagaattctgccgaaaataatattaaattattctttcttatctctagtatactagataaattgacaaaactttattct 12239683  T
Q  374 gtaagctaccgttgtcgatacacttgatgtgaacgtgcaagtcacgtcaaggatt 428  Q
    | || ||||| |||||||||| |||| |||||| |||||||||||||||||||||    
T  12239682 ggaaactaccattgtcgatacgcttggtgtgaatgtgcaagtcacgtcaaggatt 12239628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 110 - 377
Target Start/End: Original strand, 24870206 - 24870478
Alignment:
Q  110 aatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatcattcatgaacaaactctt 209  Q
    |||| |||| |||||||||||| |||||||  ||||||||||| ||||  ||||||||| |||  | |||| || | ||| | || || |||||||||||    
T  24870206 aataaatttgaaaagttgcaatagttaaaat-agaccttttagtgaaagggtgtaatgcgtgatcaatgaagcagtctaaccgtttattaacaaactctt 24870304  T
Q  210 ttaataggttatttctcttcaccaaatgacataagtttctctataaatagagacactttggagacagaaaa-----tcacattgctgtgagtctaaattc 304  Q
     |||   |||||||||||||||   | ||||||| |||||||||||||||||||||||||||| || ||||     ||| |||  |||||| | ||||||    
T  24870305 ctaaatagttatttctcttcactgtaagacataattttctctataaatagagacactttggaggcataaaagagtgtcagattcttgtgagacaaaattc 24870404  T
Q  305 tgccgaaaattatactaaattattcgttctcttctttagtgtacgag-agaattgtcagaactttattttgtaa 377  Q
    |||| ||||| ||||||||| | || |||| |||| ||||| ||||| | |||||  ||||||||||| |||||    
T  24870405 tgccaaaaataatactaaataagtctttcttttctctagtgcacgagaaaaattgatagaactttattatgtaa 24870478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 456 - 524
Target Start/End: Complemental strand, 12239565 - 12239497
Alignment:
Q  456 gggggcgaatcgaacttaaaggttagtgtggcccacacacgccatggaatttatgtgcacaattcatca 524  Q
    ||||||||||||||| ||||||||| |||| |||||||||||  || |||||||||||||| |||||||    
T  12239565 gggggcgaatcgaacctaaaggttaatgtgtcccacacacgctttgaaatttatgtgcacacttcatca 12239497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 34091806 - 34091727
Alignment:
Q  120 aaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatcattcatgaa 200  Q
    ||||||| ||||||||||| | |||||||||| | |||| |||||||| |||| |||||||  | ||||||||||||||||    
T  34091806 aaaagttacaatggttaaataaagaccttttaaa-aaaatgtgtaatgtttgataattgaagtagtgtaatcattcatgaa 34091727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 24533212 - 24533275
Alignment:
Q  147 ttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatcattcatgaacaaactcttt 210  Q
    ||||||||||||  ||||||| || ||||||| | |||||||| ||||||||||||||| ||||    
T  24533212 ttttagagaaaatatgtaatgtttaacaattgtagcaatgtaaccattcatgaacaaacacttt 24533275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 353
Target Start/End: Original strand, 24871385 - 24871468
Alignment:
Q  270 gagacagaaaatcacattgctgtgagtctaaattctgccgaaaattatactaaattattcgttctcttctttagtgtacgagag 353  Q
    ||||| ||| ||||||||  |||||||| |||||||||||||||| ||| ||||| ||||  ||| ||||| |||| |||||||    
T  24871385 gagaccgaatatcacattattgtgagtcaaaattctgccgaaaataatattaaatcattctctcttttcttaagtgcacgagag 24871468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 523 - 569
Target Start/End: Original strand, 5436988 - 5437034
Alignment:
Q  523 cacaattcatcatgttcatctttatcatcttcttgatgaagttattg 569  Q
    |||| ||||||||||||||||| |||||||||||| | |||||||||    
T  5436988 cacacttcatcatgttcatcttcatcatcttcttggtcaagttattg 5437034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 481
Target Start/End: Original strand, 24870567 - 24870616
Alignment:
Q  432 ttgcatccggttggcataa-tggtggggggcgaatcgaacttaaaggttag 481  Q
    ||||||||||||||||||| |||| |||| |||||||||||||||||||||    
T  24870567 ttgcatccggttggcataactggtagggg-cgaatcgaacttaaaggttag 24870616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 569
Target Start/End: Original strand, 37469116 - 37469154
Alignment:
Q  531 atcatgttcatctttatcatcttcttgatgaagttattg 569  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  37469116 atcatgttcatcttcatcatcttcttgatcaagttattg 37469154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 7e-35; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 94 - 280
Target Start/End: Complemental strand, 28612508 - 28612324
Alignment:
Q  94 tgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatcat 193  Q
    |||||||||||| |||||||||||| |||  ||| |||||||||| |||| |||||||||| ||| ||||| || |||||||||||| |||| |||  ||    
T  28612508 tgagagaaatttccaaaatatatttaaaa--ttgtaatggttaaatagaggccttttagagcaaaggtgtattgtttgacaattgaagcaatataacaat 28612411  T
Q  194 tcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataaatagagacactttggagacagaaaa 280  Q
    ||||||||||||||||  ||  | || ||| ||||||||||||||||||||||||| |||||| | ||||||||| ||| |||||||    
T  28612410 tcatgaacaaactcttccaaatgattgtttttcttcaccaaatgacataagtttctttataaagatagacactttcgaggcagaaaa 28612324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 277 - 434
Target Start/End: Complemental strand, 28612303 - 28612144
Alignment:
Q  277 aaaatcacattgctgtgagtctaaattctgccgaaaattatactaaattattcgttctcttctttagtgtacga-gagaattgtcagaactttattttgt 375  Q
    |||||||||||  |||||||| |||||||||||||||||||||||||| |||| ||||  ||| ||||| |||| | |||||| |||||| || ||||||    
T  28612303 aaaatcacattcttgtgagtcgaaattctgccgaaaattatactaaatcattctttcttatctctagtgcacgaggggaattgacagaacattgttttgt 28612204  T
Q  376 aagctaccgttg-tcgatacacttgatgtgaacgtgcaagtcacgtcaaggattctattg 434  Q
    |  ||||| |||  |||||  |||| |||||| || ||||||||||||||||||| ||||    
T  28612203 atactaccattgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggattccattg 28612144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 515
Target Start/End: Original strand, 11932104 - 11932187
Alignment:
Q  432 ttgcatccggttggcataa-tggtggggggcgaatcgaacttaaaggttagtgtggcccacacacgccatggaatttatgtgcac 515  Q
    ||||||||||||||||||| | |||||| ||||||| ||| |||||||||||||| || ||||| ||  || |||||||||||||    
T  11932104 ttgcatccggttggcataactagtgggg-gcgaatcaaacctaaaggttagtgtgtccaacacatgctttgaaatttatgtgcac 11932187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 523 - 569
Target Start/End: Complemental strand, 28612034 - 28611988
Alignment:
Q  523 cacaattcatcatgttcatctttatcatcttcttgatgaagttattg 569  Q
    |||| |||||||||||||| || |||||||||||||| |||||||||    
T  28612034 cacacttcatcatgttcatattcatcatcttcttgatcaagttattg 28611988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 5e-33; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 270 - 428
Target Start/End: Original strand, 49053745 - 49053905
Alignment:
Q  270 gagacagaaaatcacattgctgtgagtctaaattctgccgaaaa-ttatactaaattattcgttctcttctttagtgtacgagagaa-ttgtcagaactt 367  Q
    |||||| |||||||||||| |||| |||  ||||||||| |||| ||||||||||| |||| ||||||||| ||||| ||||| ||| ||| ||||||||    
T  49053745 gagacataaaatcacattgttgtgtgtcataattctgccaaaaaattatactaaatcattctttctcttctctagtgcacgagggaaattggcagaactt 49053844  T
Q  368 tattttgtaagctaccgttgtcgatacacttgatgtgaacgtgcaagtcacgtcaaggatt 428  Q
    |||||||||| ||||| |||||||||  |||| |||||| |||||||||||||||||||||    
T  49053845 tattttgtaaactaccattgtcgatatgcttggtgtgaatgtgcaagtcacgtcaaggatt 49053905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 270 - 434
Target Start/End: Original strand, 49061325 - 49061491
Alignment:
Q  270 gagacagaaaatcacattgctgtgagtctaaattctgccgaaaa-ttatactaaattattcgttctcttctttagtgtacgagagaa-ttgtcagaactt 367  Q
    |||||| |||||||||||| |||| |||  |||||||||||||| ||||||||||| |||| |||| |||| ||||| ||||| ||| ||| || |||||    
T  49061325 gagacataaaatcacattgttgtgtgtcataattctgccgaaaaattatactaaatcattctttcttttctctagtgcacgagggaaattgacaaaactt 49061424  T
Q  368 tattttgtaagctaccgttgtcgatacacttgatgtgaacgtgcaagtcacgtcaaggattctattg 434  Q
    |||| ||||| ||||| |||||||||   ||| |||||| |||||| ||||||||||||||| ||||    
T  49061425 tattctgtaaactaccattgtcgatatgtttggtgtgaatgtgcaaatcacgtcaaggattccattg 49061491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 91 - 264
Target Start/End: Original strand, 49053554 - 49053713
Alignment:
Q  91 ttgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaat 190  Q
    ||||||||||||||| ||||||||||||  |||||||||||||||||| | ||||||||||| ||||| ||||| ||              ||||||||     
T  49053554 ttgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaataaagaccttttagtgaaaaggtgtattg--------------caatgtaac 49053639  T
Q  191 cattcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataaatagagaca 264  Q
    ||||||| |||||||||||| ||  | || | ||||||||||||| ||||||||||| | |||||||| |||||    
T  49053640 cattcataaacaaactctttcaaatgattgtgtctcttcaccaaaggacataagtttttatataaatatagaca 49053713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 162 - 268
Target Start/End: Original strand, 17458239 - 17458345
Alignment:
Q  162 gtaatgcttgacaattgaatcaatgtaatcattcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataaatagag 261  Q
    |||||| ||||||||| |  |||||||| |||||| ||||||| ||||| ||   ||| ||||||||||||||| ||||||||||| ||||||||| |||    
T  17458239 gtaatgtttgacaattcatgcaatgtaaccattcaagaacaaattctttcaagtagttgtttctcttcaccaaaggacataagtttatctataaattgag 17458338  T
Q  262 acacttt 268  Q
    | |||||    
T  17458339 atacttt 17458345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 90 - 152
Target Start/End: Original strand, 49061133 - 49061195
Alignment:
Q  90 attgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttag 152  Q
    |||||||||||||||| ||||||||||||  |||||||||||||||||| | |||||||||||    
T  49061133 attgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaataaagaccttttag 49061195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 107 - 269
Target Start/End: Original strand, 50059269 - 50059430
Alignment:
Q  107 caaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatcattcatgaacaaact 206  Q
    |||||||||||| |||| ||||| | |||||| |||||| || ||| ||| | |||||||||||||  ||  || |||||||| ||||| | ||||| ||    
T  50059269 caaaatatatttaaaaaattgcagtcgttaaatagagacattatagtgaagaggtgtaatgcttgaacatcaaagcaatgtaaccattcgtaaacaagct 50059368  T
Q  207 cttttaataggttatttctcttcaccaaatgacataagtttctctataaatagagacactttg 269  Q
    ||||||| | | | ||||| ||||| ||| |||||||| || |||||||||| ||||||||||    
T  50059369 cttttaaaaag-tgtttctgttcactaaaagacataagattttctataaataaagacactttg 50059430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 432 - 524
Target Start/End: Original strand, 49053944 - 49054036
Alignment:
Q  432 ttgcatccggttggcataa-tggtggggggcgaatcgaacttaaaggttagtgtggcccacacacgccatggaatttatgtgcacaattcatca 524  Q
    |||||||| ||||| |||| |||||||| ||||||||||| |||||||||||||  |||||||||||  ||||||||||||| ||| |||||||    
T  49053944 ttgcatccagttggtataactggtgggg-gcgaatcgaacctaaaggttagtgtttcccacacacgcattggaatttatgtgtacacttcatca 49054036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 10917415 - 10917470
Alignment:
Q  223 tctcttcaccaaatgacataagtttctctataaatagagacactttggagacagaaaa 280  Q
    ||||||||| ||| |||||||||||||||||||||  ||||||||||||| |||||||    
T  10917415 tctcttcactaaaggacataagtttctctataaat--agacactttggaggcagaaaa 10917470  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 523 - 569
Target Start/End: Original strand, 48366509 - 48366555
Alignment:
Q  523 cacaattcatcatgttcatctttatcatcttcttgatgaagttattg 569  Q
    |||| ||||||||||||||||| |||||||||||||| |||||||||    
T  48366509 cacacttcatcatgttcatcttcatcatcttcttgatcaagttattg 48366555  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 528 - 569
Target Start/End: Original strand, 44524481 - 44524522
Alignment:
Q  528 ttcatcatgttcatctttatcatcttcttgatgaagttattg 569  Q
    ||||||||||||||||| |||||||||||||| |||||||||    
T  44524481 ttcatcatgttcatcttcatcatcttcttgatcaagttattg 44524522  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 432 - 524
Target Start/End: Original strand, 49061524 - 49061616
Alignment:
Q  432 ttgcatccggttggcataa-tggtggggggcgaatcgaacttaaaggttagtgtggcccacacacgccatggaatttatgtgcacaattcatca 524  Q
    |||||||  |||||||||| |||||||| ||||||||||| |||||  ||||||  |||||||||||  | ||||||||||||||| |||||||    
T  49061524 ttgcatctagttggcataactggtgggg-gcgaatcgaacctaaagactagtgtttcccacacacgctttagaatttatgtgcacacttcatca 49061616  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 280
Target Start/End: Complemental strand, 52282226 - 52282180
Alignment:
Q  233 aaatgacataagtttctctataaatagagacactttggagacagaaaa 280  Q
    ||||||||||| ||| |||||||||||||||||||| |||||||||||    
T  52282226 aaatgacataaatttatctataaatagagacacttt-gagacagaaaa 52282180  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 523 - 569
Target Start/End: Complemental strand, 29681337 - 29681291
Alignment:
Q  523 cacaattcatcatgttcatctttatcatcttcttgatgaagttattg 569  Q
    |||| ||||||||||||||||| |||||||||||| | |||||||||    
T  29681337 cacacttcatcatgttcatcttcatcatcttcttggtcaagttattg 29681291  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 49061211 - 49061293
Alignment:
Q  182 caatgtaatcattcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataaatagagaca 264  Q
    |||||||| ||||||| |||||| ||||| ||    || | ||||||||| ||| ||||||||||||| ||||||||||||||    
T  49061211 caatgtaaccattcataaacaaattctttcaaataattgtgtctcttcacgaaaggacataagtttctatataaatagagaca 49061293  T

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Target: scaffold0007 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 90 - 281
Target Start/End: Original strand, 217508 - 217689
Alignment:
Q  90 attgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaa 189  Q
    |||||||||||||||| | ||||||| |  ||||||||||||||||||| ||||| ||||||||||||| | ||||| |||||||||  || ||          
T  217508 attgtgagagaaatttccgaaatataataaaaaagttgcaatggttaaatagagatcttttagagaaaatgcgtaattcttgacaatcaaagca------ 217601  T
Q  190 tcattcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataaatagagacactttggagacagaaaat 281  Q
      ||||||| ||||||||||| || ||||| ||| |||| ||||||||||||||||||||||||||||  ||||||||| ||| ||||||||    
T  217602 --attcatggacaaactctttcaaaaggttgtttatctttaccaaatgacataagtttctctataaat--agacactttagaggcagaaaat 217689  T

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Target: scaffold0007; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 97 - 269
Target Start/End: Original strand, 215646 - 215816
Alignment:
Q  97 gagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatcattca 196  Q
    ||||||||| ||||||||||||  |||||||||||||||||| ||||| |||||  ||||||  ||||||| ||||| ||||||    ||||| ||||||    
T  215646 gagaaatttccaaaatatatttagaaagttgcaatggttaaatagagatcttttgaagaaaatatgtaatgtttgacgattgaa--gttgtaaccattca 215743  T
Q  197 tgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataaatagagacactttg 269  Q
    | ||||||  | |||||  ||| |||||||||||||||| ||||||||||| |||||| | ||||||||||||    
T  215744 taaacaaatccatttaaagggtcatttctcttcaccaaaggacataagtttttctatagacagagacactttg 215816  T

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Target: scaffold0007; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 277 - 428
Target Start/End: Original strand, 217708 - 217861
Alignment:
Q  277 aaaatcacattgctgtgagtctaaattctgccgaaaattatactaaattattcgttctcttctttagtgtacgagag-aattgtcagaactttattttgt 375  Q
    |||||||||||| |||| |||  ||||||||||||||| || |||||| |||| |||| |||| ||||  ||||||| ||||| |||||| |||||||||    
T  217708 aaaatcacattgttgtgtgtcagaattctgccgaaaataattctaaataattctttcttttctctagttcacgagagaaattggcagaacattattttgt 217807  T
Q  376 aagctaccgttg-tcgatacacttgatgtgaacgtgcaagtcacgtcaaggatt 428  Q
    || ||||| ||| |||||||||||| |||||| ||||||||| | |||||||||    
T  217808 aaactaccattgatcgatacacttggtgtgaatgtgcaagtctcttcaaggatt 217861  T

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