View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19488_low_54 (Length: 208)
Name: NF19488_low_54
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19488_low_54 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 1220280 - 1220105
Alignment:
| Q |
17 |
cagacaaatacagagtttctacaatcataataaccacatgcaagattcattattgtgcgcaatatctcttgagatcattaacataataacaatttgattt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1220280 |
cagacaaatacagagtttctacaatcataataaccacatgcaagattcattattgtgcgcaatatctcttgagatcattaacataataacaatttgattt |
1220181 |
T |
|
| Q |
117 |
tatttaacnnnnnnngatatagtagaaaacttaatatgtaagttccaacaaaaacgaaaagaaactagtattatttg |
193 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1220180 |
tatttaac-aaaaaagatatagtagaaaacttaatatgtaagttccaacaaaaacgaaaagaaactagtattatttg |
1220105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University