View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19488_low_8 (Length: 543)
Name: NF19488_low_8
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19488_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 16 - 527
Target Start/End: Complemental strand, 40777977 - 40777459
Alignment:
| Q |
16 |
atgaaccacacctgcataacttgcgaagaactgaagcctgggaaaggtatgcttctgaaaggtttggatctgcttctattgcagcatctagatcattaag |
115 |
Q |
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| T |
40777977 |
atgaaccacacctgcataacttgcgaagaactgaagcctgggaaaggtatgcttctgaaaggtttggatctgcttctattgcagcatctagatcattaag |
40777878 |
T |
|
| Q |
116 |
tgcctcagtataatgtttcccttttatacttcgggatgctttctcaaataactcagctgcatttcctggttttccaccagatcacaaccaaaaacgattg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40777877 |
tgcctcagtataatgtttcccttttatacttcgggatgctttctcaaacaactcagctgcatttcctggttttccaccagatcacaaccaaaaacgattg |
40777778 |
T |
|
| Q |
216 |
ttcaggnnnnnnntttcaattgaacactgaatcatcacattcacaggacttctagagaagtaataaagttaggacttaggagtaatattttttagtggga |
315 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40777777 |
ttcaggaaacaaatttcaattgaacactgaatcatcacattcacaggacttctagagaagtaataaagttaggacttaggagtaataatttttagtggga |
40777678 |
T |
|
| Q |
316 |
ttgtgtgcaaaaactttaattcaaatgaaaagttgaaaatgaagacggaaactactatcaacctgtttgaattagattaaatttactacaaactgaataa |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40777677 |
ttgtgtgcaaaaactttaattcaaatgaaaagttgaaaatgaagacggaaactaccatcaacctgtttgaattagattatatttactacaaactgaataa |
40777578 |
T |
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| Q |
416 |
acttgctaagaggcaattttgaccggcttcaacaccaatacaagaagacctta-------tatactatactgcatataccacaacatagtgcaattaaaa |
508 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40777577 |
acttgctaagaggcaattttgaccagcttcaacgccaatacaagaagaccttatatagtatatactatactgcatataccacaacatagtgcaattaaaa |
40777478 |
T |
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| Q |
509 |
aacttggacatgcaacttg |
527 |
Q |
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||||||||||||||||||| |
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| T |
40777477 |
aacttggacatgcaacttg |
40777459 |
T |
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