View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19489_high_15 (Length: 302)

Name: NF19489_high_15
Description: NF19489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19489_high_15
NF19489_high_15
[»] chr5 (4 HSPs)
chr5 (16-275)||(13473185-13473444)
chr5 (100-149)||(24300871-24300920)
chr5 (100-149)||(24372395-24372444)
chr5 (111-159)||(6291670-6291718)
[»] chr8 (1 HSPs)
chr8 (70-255)||(16952479-16952667)
[»] chr1 (2 HSPs)
chr1 (102-154)||(44382624-44382676)
chr1 (100-150)||(3584330-3584380)
[»] scaffold0061 (1 HSPs)
scaffold0061 (100-169)||(11569-11638)
[»] chr3 (2 HSPs)
chr3 (102-165)||(51046809-51046872)
chr3 (98-150)||(24409258-24409310)
[»] chr6 (1 HSPs)
chr6 (96-166)||(7779871-7779941)
[»] chr7 (1 HSPs)
chr7 (113-169)||(1555236-1555292)
[»] chr2 (1 HSPs)
chr2 (110-166)||(14825032-14825088)


Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 13473444 - 13473185
Alignment:
Q  16 catcatcaaggactaatacttaaaaattgtttaaaactcaaacgacatatgttatttcttagtgttagttgttgacgactctcttcatttttatgattga 115  Q
    ||||||| ||||||  |||||||||||||||||||| ||||||||| |||||||||| |||||| ||||||||||| |||||||||||||||||||||||    
T  13473444 catcatcgaggactgttacttaaaaattgtttaaaattcaaacgacgtatgttattttttagtgatagttgttgacaactctcttcatttttatgattga 13473345  T
Q  116 aataatgatttaattgaaatcggtttgattaaaacgacagaaaataaatatatatcttatatccgaaatcaatacattcaccatgttagttgtaaatatg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13473344 aataatgatttaattgaaatcggtttgattaaaacgacagaaaataaatatatatcttatatccgaaatcaatacattcaccatgttagttgtaaatatg 13473245  T
Q  216 agaagggtcatgtgtttttgtttttaaataatatcgttgatactcgttaattttaagtat 275  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  13473244 agaagggtcgtgtgtttttgtttataaataatatcgttgatactcattaattttaagtat 13473185  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 24300871 - 24300920
Alignment:
Q  100 tcatttttatgattgaaataatgatttaattgaaatcggtttgattaaaa 149  Q
    |||||||||||||||||||| ||| |||||| ||  ||||||||||||||    
T  24300871 tcatttttatgattgaaatattgacttaattaaatccggtttgattaaaa 24300920  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 24372444 - 24372395
Alignment:
Q  100 tcatttttatgattgaaataatgatttaattgaaatcggtttgattaaaa 149  Q
    |||||||||||||||||||| ||| |||||| ||  ||||||||||||||    
T  24372444 tcatttttatgattgaaatattgacttaattaaatccggtttgattaaaa 24372395  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 6291718 - 6291670
Alignment:
Q  111 attgaaataatgatttaattgaaatcggtttgattaaaacgacagaaaa 159  Q
    |||||||||||||||||||||| |||  |||||||||||| ||| ||||    
T  6291718 attgaaataatgatttaattgatatcattttgattaaaacaacataaaa 6291670  T

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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 70 - 255
Target Start/End: Original strand, 16952479 - 16952667
Alignment:
Q  70 tttcttagtgttagttgttgacgactctcttcatttttatgattgaaataatgatttaattgaaatcggtttgattaaaacgacagaaaataaatatata 169  Q
    |||||||||| ||| |||| | ||  ||| ||||||||| |||||||||| ||| |||||||||| ||||||||||||||| || |||||||||||| ||    
T  16952479 tttcttagtgatagatgttaatgatcctcctcatttttaagattgaaatagtgacttaattgaaaccggtttgattaaaacaacggaaaataaatatgta 16952578  T
Q  170 tcttatat----ccgaaatcaatacattcaccatgttagttgtaaatatgagaagggtcatgtgtttttgtttttaaataatatcgttga 255  Q
     ||  |||    |||| ||||||  | ||||||| ||||  |||||||||| |||| ||||||| |||| ||||| |||| |||||||||    
T  16952579 gctcctattgaaccgatatcaatcaagtcaccatcttagccgtaaatatgaaaaggatcatgtg-ttttatttttcaatagtatcgttga 16952667  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 44382676 - 44382624
Alignment:
Q  102 atttttatgattgaaataatgatttaattgaaatcggtttgattaaaacgaca 154  Q
    ||||||||||||||||||||||||||||||| ||| ||||||| | |||||||    
T  44382676 atttttatgattgaaataatgatttaattgatatcagtttgatcataacgaca 44382624  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 3584380 - 3584330
Alignment:
Q  100 tcatttttatgattgaaataatgatttaattgaaatcggtttgattaaaac 150  Q
    ||||||||| ||||||||||||||||||||||| | | |||||||||||||    
T  3584380 tcatttttaagattgaaataatgatttaattgataccagtttgattaaaac 3584330  T

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Target: scaffold0061 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 11638 - 11569
Alignment:
Q  100 tcatttttatgattgaaataatgatttaattgaaatcggtttgattaaaacgacagaaaataaatatata 169  Q
    |||||||||||||||||||||| ||||| |||| || | || ||||||||| |  |||||||||||||||    
T  11638 tcatttttatgattgaaataataatttatttgatatagattggattaaaacaatggaaaataaatatata 11569  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 51046872 - 51046809
Alignment:
Q  102 atttttatgattgaaataatgatttaattgaaatcggtttgattaaaacgacagaaaataaata 165  Q
    ||||||| ||||||||||||||||||||||  |||  |||||||||||| ||| ||| ||||||    
T  51046872 atttttacgattgaaataatgatttaattgttatcaatttgattaaaacaacaaaaactaaata 51046809  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 24409258 - 24409310
Alignment:
Q  98 cttcatttttatgattgaaataatgatttaattgaaatcggtttgattaaaac 150  Q
    ||||| ||||| |||| |||||||||||||||||| ||  |||||||||||||    
T  24409258 cttcaattttaagattcaaataatgatttaattgatattagtttgattaaaac 24409310  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 7779941 - 7779871
Alignment:
Q  96 ctcttcatttttatgattgaaataatgatttaattgaaatcggtttgattaaaacgacagaaaataaatat 166  Q
    ||||| ||||||| |||||||||||||| |||| ||| |||  |||||||||||| |  ||||||||||||    
T  7779941 ctctttatttttacgattgaaataatgacttaactgatatcaatttgattaaaactatggaaaataaatat 7779871  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 1555292 - 1555236
Alignment:
Q  113 tgaaataatgatttaattgaaatcggtttgattaaaacgacagaaaataaatatata 169  Q
    ||||||||| | |||| ||| ||||||||||||||||| | | ||||||||||||||    
T  1555292 tgaaataataaattaaatgacatcggtttgattaaaacaagaaaaaataaatatata 1555236  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 14825032 - 14825088
Alignment:
Q  110 gattgaaataatgatttaattgaaatcggtttgattaaaacgacagaaaataaatat 166  Q
    |||||||||||| |||| ||||| ||| ||||||||||| | ||| |||||||||||    
T  14825032 gattgaaataattatttgattgatatcagtttgattaaaccaacataaaataaatat 14825088  T

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