View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19489_high_2 (Length: 382)
Name: NF19489_high_2
Description: NF19489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19489_high_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 36467511 - 36467892
Alignment:
| Q |
1 |
acattgatagtgatactgaagatataaaagttaatagcagcaacgatgttcgtactgatggagatgcagacggtgtggaattaaaccatggtaatggtgt |
100 |
Q |
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| T |
36467511 |
acattgatagtgatactgaagatataaaagttaatagcagcaacgatgttcgtactgatggagatgcagacggtgtggaattaaaccatggtaatggtgt |
36467610 |
T |
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| Q |
101 |
ttgcaatgagcaagggaaaaagaactttgatggttacaaatgcatcaatgatgtgacagatgacgatgtaaaggatatggaattcaacacagaggatgaa |
200 |
Q |
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| T |
36467611 |
ttgcaatgagcaagggaaaaagaactttgatggttacaaatgcatcaatgatgtgacagatgatgatgtaagggatatggaattcaacacagaggatgaa |
36467710 |
T |
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| Q |
201 |
gctacggagttttatgtattgtttgcaaaataccacgggtttgaagtaagaaaggatgatgtgaaacgttattctaatgggaacattattatgcgtcaat |
300 |
Q |
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| T |
36467711 |
gctacggagttttatgtattgtttgcaaaataccacgggtttgaagtaagaaaggatgatgtgaaacgttattctaatgggaacattattatgcgtcaat |
36467810 |
T |
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| Q |
301 |
tagtatgcaaaaagaagaatgcattgtaactatttggatgtctgctgtatggttatgtggattggttgtgtgcgttttctac |
382 |
Q |
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| T |
36467811 |
tagtatgcaaaaagaagaatgcattgtaactatttggatgtctgctgtatggttatgtggattggttgtgtgcgttttctac |
36467892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 28 - 157
Target Start/End: Original strand, 28718448 - 28718578
Alignment:
| Q |
28 |
aagttaatagcagcaacgatgttcgtactgatggagatgcagacggtgtggaattaaaccatggtaatggtgtttgcaatgagcaagggaaaa-agaact |
126 |
Q |
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| T |
28718448 |
aagttaatagcggcaacgatgttcgtactgatagagatacaggcgatatgaaattcaaccatggtaatggtgtttgcagtgagcaattgaaaagagaatt |
28718547 |
T |
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| Q |
127 |
ttgatggttacaaatgcatcaatgatgtgac |
157 |
Q |
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| T |
28718548 |
ctaatggctacaaatgcatcagtgatgtgac |
28718578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 7 - 163
Target Start/End: Original strand, 28738738 - 28738895
Alignment:
| Q |
7 |
atagtgatactgaagatataaaagttaatagcagcaacgatgttcgtactgatggagatgcagacggtgtggaattaaaccatggtaatggtgtttgcaa |
106 |
Q |
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| T |
28738738 |
atagtgatactgaagatatagaagtcaataacgacatcaatgttcgtagtgatagagatgtaggcagtatggaattcaaccatggtaatggtgtttgcag |
28738837 |
T |
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| Q |
107 |
tgagcaagggaaaa-agaactttgatggttacaaatgcatcaatgatgtgacagatga |
163 |
Q |
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| T |
28738838 |
tgagcaagggaaaagagaattccaatggttacaaatgcattagtaatgtgacaaatga |
28738895 |
T |
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