View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19489_high_4 (Length: 361)
Name: NF19489_high_4
Description: NF19489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19489_high_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 12 - 361
Target Start/End: Complemental strand, 38564582 - 38564233
Alignment:
| Q |
12 |
cacagaggaggtgatagtggtttacgtgcatgtctcattacccttttcttatgccaggatatatcgagaaattaaaattgagtaaatgaaaatgcaaaga |
111 |
Q |
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| T |
38564582 |
cacagaggaggggatagtggtttacgtgcaagtctcattacccttttcttatgccaggatatatcgagaaattaaaattgagtaaatgaaaatgcaaaga |
38564483 |
T |
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| Q |
112 |
ttaatacttcatttgtttataaacatgtgcgaacgttcataatctcaatatatatctgactgatcaggaatttgaatgagacaaatgcagaggatgttgc |
211 |
Q |
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| T |
38564482 |
ttaatacttcatttgtttataaacatgtgcgaacgttcataatctcaatatatatctgactgatcaggaatttgaatgagacaaatgcagaggatgttgc |
38564383 |
T |
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| Q |
212 |
ttaacgcatttgccatataccactcgttcattagggacccttgtgaccggtgtgattgggtgcacgtgatgctaatgcatacataaaccaaattcacctt |
311 |
Q |
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| T |
38564382 |
ttaacgcatttgccatataccactcgttcattagggacccttgtgaccggtgtgattgggtgcacgtgatgctaatgcatacataaaccaaattcacctt |
38564283 |
T |
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| Q |
312 |
tgagttgagtatgatctaagctatatttgcttgtttaacttggatatatt |
361 |
Q |
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| T |
38564282 |
tgagttgagtatgatctaagctatatttgcttgtttaacttggatatatt |
38564233 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 283
Target Start/End: Original strand, 34692131 - 34692224
Alignment:
| Q |
192 |
acaaatgcagaggatgttgcttaacgcatttgccatataccactcgt--tcattagggacccttgtgaccggtgtgattgggtgcacgtgatgc |
283 |
Q |
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| T |
34692131 |
acaaatgcagaggatgttgcttaaagcatttgccaaatgccacttgttctcgttagggaccctcgtgactggtgtgagcatgtgcacgtgatgc |
34692224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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