View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19489_high_5 (Length: 352)
Name: NF19489_high_5
Description: NF19489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19489_high_5 |
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| [»] scaffold0328 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: scaffold0328 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 135 - 352
Target Start/End: Original strand, 2764 - 2981
Alignment:
| Q |
135 |
tttatttctctctgggttgttatcatgtgagagtttatttctctctaggtatgttatgatttgtgagagtttatttctttctgtgaagttttatttatgt |
234 |
Q |
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| T |
2764 |
tttatttctctctggattgttatcatgtgagagtttatttctctctagacatgttatgattagtgagagtttatttctttatatggagttttatttatgg |
2863 |
T |
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| Q |
235 |
gagtttatttctctctgggtatgatatttttgtggagtttatttctccctgtgtgtttgaagcttttatgtgaggttgggtatttccaaattctgttgta |
334 |
Q |
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| T |
2864 |
gattttatttctccctgggtatgatatttttgtagagtttatttctccttgtgtgtttgaagcttttatgtgaggctgggtatttccaaattctattgta |
2963 |
T |
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| Q |
335 |
gtatgcctctgatgtttt |
352 |
Q |
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| T |
2964 |
gtatgcctctggtgtttt |
2981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 236 - 352
Target Start/End: Original strand, 20072979 - 20073094
Alignment:
| Q |
236 |
agtttatttctctctgggtatgatatttttgtggagtttatttctccctgtgtgtttgaagcttttatgtgaggttgggtatttccaaattctgttgtag |
335 |
Q |
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| T |
20072979 |
agtttatttctcattgagtatgttatttttgtggagtttatttctccctatgtgtttgaag-ttttctttgaggctggatatttccaatttccgctgtag |
20073077 |
T |
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| Q |
336 |
tatgcctctgatgtttt |
352 |
Q |
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| T |
20073078 |
taagcctctgatgtttt |
20073094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 6628212 - 6628271
Alignment:
| Q |
193 |
atttgtgagagtttatttctttctg-tgaagttttatttatgtgagtttatttctctctg |
251 |
Q |
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| T |
6628212 |
atttttgagagtttatttctttctgatgaagttttacttgtgagagtttatttctctctg |
6628271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 180
Target Start/End: Original strand, 19705890 - 19705939
Alignment:
| Q |
129 |
tgggagtttatttctctctgggttgttatcatgtgagagtttatttctctct |
180 |
Q |
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| T |
19705890 |
tgggagtttatttctccctgggttgctgt--tgtgagagtttatttctctct |
19705939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 180
Target Start/End: Original strand, 19004970 - 19005019
Alignment:
| Q |
129 |
tgggagtttatttctctctgggttgttatcatgtgagagtttatttctctct |
180 |
Q |
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| T |
19004970 |
tgggagtttatttctccctggattgatat--tgtgagagtttatttctctct |
19005019 |
T |
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