View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19489_high_7 (Length: 332)
Name: NF19489_high_7
Description: NF19489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19489_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 2 - 323
Target Start/End: Complemental strand, 28988347 - 28988029
Alignment:
| Q |
2 |
gccacaaaataacagggctcaaaatcagaacccggaagcatcattaacataatcaatgtacacaacctcagagaaaagaaagaagaaaaggtatttttcc |
101 |
Q |
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| T |
28988347 |
gccacaaaataacagggctcaaaatcagaacccagaagcatcattaacataatc---gtacacaacctcagagaaaagaaagaagaaaaggtatttttcc |
28988251 |
T |
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| Q |
102 |
cccaccacactacaattatttaaagctccaaaattctaacttagactttactagctacgaagcagacaccgacacgacactgacacggatacgtcgacac |
201 |
Q |
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| T |
28988250 |
cccaccacactacaattatttaaagctccaaaattctaacttatactttactagctacgaagcagacaccgacacgacactgacacggatacgtcgacac |
28988151 |
T |
|
| Q |
202 |
aggtgatttatgtgtaggtgttgtgtcagtgtcagacaccggtgcgttttggatacaggaaacacctaatctaagaggtgtccgtgcttcagaacttact |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28988150 |
aggtgatttatgtgtaggtgttgtgtcagtgtcagacaccggtgcgttttggacacaggaaacacctaatctaagaggtgtccgtgcttcagaacttact |
28988051 |
T |
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| Q |
302 |
agtaacaactcactacctatga |
323 |
Q |
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|||||||||||||||||||||| |
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| T |
28988050 |
agtaacaactcactacctatga |
28988029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 201
Target Start/End: Complemental strand, 44572683 - 44572654
Alignment:
| Q |
172 |
gacacgacactgacacggatacgtcgacac |
201 |
Q |
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| T |
44572683 |
gacacgacactgacacggatacgtcgacac |
44572654 |
T |
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