View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1948_high_13 (Length: 264)
Name: NF1948_high_13
Description: NF1948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1948_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 52002609 - 52002537
Alignment:
| Q |
170 |
tcatcagcaatcgaactttgtttttcgtccttaaccaagtattataagcatattccatatgtcacttcttttc |
242 |
Q |
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| T |
52002609 |
tcatcagcaattgaactttgtttttcgtccttaaccaagtattataagcatattgcatacgtctcttcttttc |
52002537 |
T |
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Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 170 - 249
Target Start/End: Complemental strand, 5174806 - 5174727
Alignment:
| Q |
170 |
tcatcagcaatcgaactttgtttttcgtccttaaccaagtattataagcatattccatatgtcacttcttttcgtctgtg |
249 |
Q |
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||||||||||| ||| |||||||||| ||||||||||| ||| ||||||||||||||||| |||||||||||||| |||| |
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| T |
5174806 |
tcatcagcaattgaagtttgtttttcatccttaaccaaatataataagcatattccatatctcacttcttttcgtttgtg |
5174727 |
T |
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