View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1948_high_22 (Length: 209)
Name: NF1948_high_22
Description: NF1948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1948_high_22 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 52476911 - 52477119
Alignment:
| Q |
1 |
cgtttcttagaatcacctttgctgactccttgctcgaaatgaaaacatgggtttccccaaacaacttggtcttgaagcaaaatccatatctgcaatgcat |
100 |
Q |
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| T |
52476911 |
cgtttcttagaatcacctttgctgactccttgctcgaaatgaaaacatgggtttccccaaacaacttggtcttgaagcaatttccatatctgcaatgcat |
52477010 |
T |
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| Q |
101 |
acacaacttagtcctctcttaagagtctcaaattctaagttcctctttgttactgttattttcactataactataaattgtcatcaagaacccgcatgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52477011 |
acacaacttagtcctctcttaagagtctcaaattctaagttcctctttgttactgttattttcactataactataaattgtcatcaagaacccgcatgtc |
52477110 |
T |
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| Q |
201 |
ttaaagttt |
209 |
Q |
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||||||||| |
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| T |
52477111 |
ttaaagttt |
52477119 |
T |
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