View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1948_high_3 (Length: 530)
Name: NF1948_high_3
Description: NF1948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1948_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 43 - 380
Target Start/End: Complemental strand, 7458577 - 7458240
Alignment:
| Q |
43 |
tattaggtagggtttcgtttttggtgttatgtgcactgtatttgagttatattacttcctgcaatnnnnnnncaaaggttatgctgttgtttgttgactt |
142 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
7458577 |
tatttggtagggattcgtttttggtgttatgtgcactgtatttgagttatattacttcctgcaataaaaaaacaaaagttatgctgttgtttgttgactt |
7458478 |
T |
|
| Q |
143 |
tacttaattgctgtcaatcttttaaagccaaccaatgaatcgggaccagtagcattagcatatatactcatactaggttcaaccctataaatattccaaa |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7458477 |
tacttaattgctgtcaatcttttaaagccaaccaatgaatcgggaccagtagcattagcatatatactcatacttggttcaaccctataaatattccaaa |
7458378 |
T |
|
| Q |
243 |
taggnnnnnnnnnnnnnnnncttggcattatgtttatttggaattctgtgcacccctctcccatgcacacaaacagcagaactaagcaacatgaaccgtc |
342 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7458377 |
taggaaaagaaaaagaaaaacttggcattatgtttatttggaattgtgtgcacccctctcccatgcacacaaacagcagaactaagcaacatgaaccgtc |
7458278 |
T |
|
| Q |
343 |
ctctaactgcaatctgtgtcatccaacacctcttaaca |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7458277 |
ctctaactgcaatctgtgtcatccaacacctcttaaca |
7458240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 424 - 512
Target Start/End: Complemental strand, 7458214 - 7458126
Alignment:
| Q |
424 |
ataaaaatagatcaaacgtggcattaatctagtcaatctattgaggaatatccagttcaatcttggacatgaaagaaataaagtgttac |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7458214 |
ataaaaatagatcaaacgtggcattaatctagtcaatctattgaggaatatccagttcaatcttggacatgaaagaaataaagtgttac |
7458126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 424 - 507
Target Start/End: Complemental strand, 7443926 - 7443841
Alignment:
| Q |
424 |
ataaaaatagatcaaacgtggcattaatctagtcaatctattgaggaatatccagttca--atcttggacatgaaagaaataaagt |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||| |||||||||||||| |
|
|
| T |
7443926 |
ataaaaatagatcaaacgtggcattaatctagtcaatctattgaggaatattcagttcaatatcctggacaagaaagaaataaagt |
7443841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 370
Target Start/End: Complemental strand, 7444035 - 7443970
Alignment:
| Q |
306 |
tgcacacaaacagcagaactaagcaacatgaaccgtcctctaactgc-aatctgtgtcatccaaca |
370 |
Q |
| |
|
|||||||| ||||||| || ||| |||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
7444035 |
tgcacacacacagcagcaccaagtaacatggaccgtcctctaactgcaaatctgtgtcatccaaca |
7443970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 44
Target Start/End: Complemental strand, 7458890 - 7458859
Alignment:
| Q |
13 |
aatattaagaatgaagttataaagaaaacata |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
7458890 |
aatattaagaatgaagttataaagaaaacata |
7458859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University