View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1948_high_4 (Length: 509)
Name: NF1948_high_4
Description: NF1948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1948_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 3 - 494
Target Start/End: Original strand, 35506939 - 35507430
Alignment:
| Q |
3 |
gaacacagatattttatttttgaagatagaaacnnnnnnngcatggtagttagcatagtgagaaagagattctgcatagaagaagcttcttgattttcta |
102 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35506939 |
gaacacagatattttatttttgaagatagaaacaaaaaaagcatggtagttagcatagtgagaaagagattctgcatagaagaagcttcttgattttcta |
35507038 |
T |
|
| Q |
103 |
ctagttgatcatgcattatataagtgcatgttttggtgattaaactttgtgtgtggaaagcttttgaggaacactgagaggaaaaacatgggaaataaga |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35507039 |
ctagttgatcatgcattatataagtgcatgttttggtgattaaactttgtgtgtggaaagcttttgaggaacactgagaggaaaaacatgggaaataaga |
35507138 |
T |
|
| Q |
203 |
tggtaacatacaacaagtacaaaagagtcttgttctttatcaaaaagtataaggtgactgagctggttccacctgaagacctcagggagattttttctga |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35507139 |
tggtaacatacaacaagtacaaaagagtcttgttctttatcaaaaagtataaggtgactgagctggttccacctgaagacctcagggagattttttctga |
35507238 |
T |
|
| Q |
303 |
gtttgccggaggtggatcatacatgtcaaccgagcaattacatcggtttcttgtggagcatcaaggcgaggagaatttcacgttattggatacggagaaa |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35507239 |
gtttgccggaggtggatcatacatgtcaaccgagcaattacaccggtttcttgtggagcatcaaggcgaggagaatttcacgttattggatacggagaaa |
35507338 |
T |
|
| Q |
403 |
attgttgacaaggtttggcaactgagaaggacacaacaggaaacggttcatgttgatcaacatagagaaaggaaaatcgcccttgatgatat |
494 |
Q |
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|||||||| ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35507339 |
attgttgataagattttgcagctgagaaggacacaacaggaaacggttcatgttgatcaacatagagaaaggaaaatcgcccttgatgatat |
35507430 |
T |
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