View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1948_low_1 (Length: 710)
Name: NF1948_low_1
Description: NF1948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1948_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 7 - 480
Target Start/End: Original strand, 18109942 - 18110415
Alignment:
| Q |
7 |
gaagcaaaggttgaaaaagctcaagagaccaatattccatcaccacaatctactaatttggaagaatcaaccaaagacatgaaaagtgattcacctcaaa |
106 |
Q |
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| T |
18109942 |
gaagcaaaggttgaaaaagctcaagagaccaatattccaccaccacaatctactaatttggaagaatcaactaaagacatgaaaagtgattcacctcaaa |
18110041 |
T |
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| Q |
107 |
cttctcaaagcattgnnnnnnngacacaaaatgatgatgacacatcatctcaaattcctcaaaagggtcaacaagaatttgagccaaaaccaacatctaa |
206 |
Q |
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| T |
18110042 |
cttctcaaagcattgaaaaaaagacacaaaatgatgatgacacatcatctcaaattcctcaaaagggtcaacaagaatttgagccaaaaccaacatctaa |
18110141 |
T |
|
| Q |
207 |
agacacaaccaatgaccaaatagatgaaaagtctcaaaagggtcaagaagaatttgaaacaagaccaacatcaatagagagagccaaaacacaaatagat |
306 |
Q |
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| T |
18110142 |
agacacaaccaatgaccaaatagatgaaaagtctcaaaagggtcaagaagaatttgaaacaagaccaacatcaatagagagagccaaaacacaaatagat |
18110241 |
T |
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| Q |
307 |
gaaaagcctcaaaatggtcaacaagtgttggagtcaaaaccaacatctatagagagaaccaaaacacaaacaaatgaaaaggctcaaaagggtgaagagg |
406 |
Q |
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| T |
18110242 |
gaaaagcctcaaaatggtcaacaagtgttggagtcaaaaccaacatctatagagagaaccaaagcacaaacaaatgaaaaggctcaaaagggtgaagagg |
18110341 |
T |
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| Q |
407 |
aagtagaaccaaaaacaatagagaaattggttaccaaagaaaatttagaggaaaagatagtaggaatgagtgct |
480 |
Q |
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| T |
18110342 |
aagtagaaccaaaaacaatagagaaattggttaccaaagaaaatttagaggaaaagatagtaggaatgagtgct |
18110415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 542 - 706
Target Start/End: Original strand, 18110477 - 18110641
Alignment:
| Q |
542 |
cttatgagtcaagcaagaatcaaaacttagaagaaaaggaagttgaaaaagcagaaccttctgctccaaatgttccagagaaggaaaaggaatcttgctg |
641 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18110477 |
cttatgagtcaagcaagaatcaaaacttagaagaaaaggaagttgaaaaagcagaaccttctgctccaaatgttccagagaaggaaaaggaatcttgctg |
18110576 |
T |
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| Q |
642 |
cagaattcctccaaatcaagaaggaaagaatggaatcagaaaatttgctgctacttcatctcagt |
706 |
Q |
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| T |
18110577 |
cagaattcctcccaatcaagaaggaaagaatggaatcagaaaatttgctgctacttcttctcagt |
18110641 |
T |
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