View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1948_low_10 (Length: 372)
Name: NF1948_low_10
Description: NF1948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1948_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 47688967 - 47688769
Alignment:
| Q |
16 |
caaatttcaggtgaaaaaagttagtgaaagttgctccctaccaacattaggccttagagatatatcgggaaatttcttgtaaggaagaaattaattagat |
115 |
Q |
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| T |
47688967 |
caaatttcaggtgaaaaaagttagtgaaagttgctccctaccaacattaggccttagagatatatcgggaaatttcttgtaaggaagaaattaattagat |
47688868 |
T |
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| Q |
116 |
aaaaggaaaacatatttgccactcattacatgaggaaaataaatgagaccaataaaaataattggaataaaactaaacttacatatctaacagtccatc |
214 |
Q |
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| T |
47688867 |
aaaaggaaaatatatttgccactcattacatgaggaaaataaatgagaccaataaaaataattggaataaaactaaacttacatatctaacagtccatc |
47688769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 240 - 360
Target Start/End: Complemental strand, 7520176 - 7520056
Alignment:
| Q |
240 |
taattaattaaagtagcgctaacttatgttagttttcacttatctaatgatttataatacgattattgaagaaatacattaagtttaaagtgttttcttt |
339 |
Q |
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| T |
7520176 |
taattaattaaagtagcgctaacttatgttagttttcatttatctaatgatttataatacgattattgaagaaatacattaagtttaaagtgttttcttt |
7520077 |
T |
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| Q |
340 |
tctctctttctccctgcccta |
360 |
Q |
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| T |
7520076 |
tctctctttctccctgcccta |
7520056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 240 - 360
Target Start/End: Complemental strand, 47688539 - 47688419
Alignment:
| Q |
240 |
taattaattaaagtagcgctaacttatgttagttttcacttatctaatgatttataatacgattattgaagaaatacattaagtttaaagtgttttcttt |
339 |
Q |
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| T |
47688539 |
taattaattaaagtagcgctaacttatgttagttttcatttatctaatgatttataatacgattattgaagaaatacattaagtttaaagtgttttcttt |
47688440 |
T |
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| Q |
340 |
tctctctttctccctgcccta |
360 |
Q |
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| T |
47688439 |
tctctctttctccctgcccta |
47688419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 37417487 - 37417290
Alignment:
| Q |
16 |
caaatttcaggtgaaaaaagttagtgaaagttgctccctaccaacattaggccttagag------atatatcgggaaatttcttgtaaggaagaaattaa |
109 |
Q |
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|||||||||||| || ||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37417487 |
caaatttcaggtcaagaaagttagtgaaagttgctccctgctaacattaggccttagagttagagatatatcgggaaatttcttgtaaggaagaaattaa |
37417388 |
T |
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| Q |
110 |
ttagataaaagga----aaacatatttgccactcattacatgaggaaaataaatgagaccaataaaaataattggaataaaactaaacttacatatctaa |
205 |
Q |
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| T |
37417387 |
ttagataataggaatatatatatatttgtcactccttacatgag--aaagaaacgagagcaaaaaaataaattggaataatactaaacttacatatctaa |
37417290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 308 - 357
Target Start/End: Complemental strand, 37417010 - 37416961
Alignment:
| Q |
308 |
aagaaatacattaagtttaaagtgttttcttttctctctttctccctgcc |
357 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
37417010 |
aagaaatacattaagcttaaagtgttttcttttctctctttgtccctgcc |
37416961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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