View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1948_low_11 (Length: 367)
Name: NF1948_low_11
Description: NF1948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1948_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 12 - 348
Target Start/End: Complemental strand, 45974723 - 45974382
Alignment:
| Q |
12 |
atgaaccaaatgatgccaacttttttatggagatcggcattannnnnnnnattaagttaggaaggaatagaaattttattttctgattaaaattatcaac |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45974723 |
atgaaccaaatgatgccaacttttttatggagatcggcattattttttttattaagttaggaaggaatagaaattttattttctgattaaaattatcaac |
45974624 |
T |
|
| Q |
112 |
aaattattacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagagactgtgacaaccgattagaacttcga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45974623 |
aaattattacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagagactgtgacaacctattagaacttcga |
45974524 |
T |
|
| Q |
212 |
atgaagatgggaaaggttgataccaac-----atgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataaaatggacatttctgctat |
306 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45974523 |
atgaagatgggaaaggttgataccaacatgacatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataaaatggacatttctgctat |
45974424 |
T |
|
| Q |
307 |
atatgcttccaaaggtaaccaaaatatcattcattgttctga |
348 |
Q |
| |
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| T |
45974423 |
atatgctgccaaaggtaaccaaaatatcattcattgttctga |
45974382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 90 - 347
Target Start/End: Original strand, 45857200 - 45857458
Alignment:
| Q |
90 |
ttttctgattaaaattatcaacaaattattacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagagactg |
189 |
Q |
| |
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|||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
45857200 |
ttttctgattgaaattattaacaaattattagctaatattatatgttgaactttaagtcagtagatttttacatttatgattgtgttcctgtagagatca |
45857299 |
T |
|
| Q |
190 |
tgacaaccgatt-agaacttcgaatgaagatgggaaaggttgataccaacatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataa |
288 |
Q |
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||| ||| | | ||||||||||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
45857300 |
tgataactgcctcagaacttcgaatgaagatgggaaagcttaacaccaacatgattgaagagacaggaaaagtgaaagcaaaaaggattgacaacaataa |
45857399 |
T |
|
| Q |
289 |
aatggacatttctgctatatatgcttccaaaggtaaccaaaatatcattcattgttctg |
347 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45857400 |
aatggacatttctgctatatatgctgccaaaggtaaccaaaatatcattcattgttctg |
45857458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 90 - 347
Target Start/End: Original strand, 45869754 - 45870011
Alignment:
| Q |
90 |
ttttctgattaaaattatcaacaaattattacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagagactg |
189 |
Q |
| |
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|||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| | |||||| |
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| T |
45869754 |
ttttctgattgaaattattaacaaattattagctaatattatatgttgaactttaagtcagtagatttttacaattatgattgtgttcct-tagagatca |
45869852 |
T |
|
| Q |
190 |
tgacaaccgatt-agaacttcgaatgaagatgggaaaggttgataccaacatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataa |
288 |
Q |
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|||| |||| | ||||||||||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
45869853 |
tgactaccgcctcagaacttcgaatgaagatgggaaagcttaacaccaacatgattgaagagacaggaaaagtgaaagcaaaaaggattgacaacaataa |
45869952 |
T |
|
| Q |
289 |
aatggacatttctgctatatatgcttccaaaggtaaccaaaatatcattcattgttctg |
347 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45869953 |
aatggacatttctgctatatatgcttccaaaggtaaccaaaatatcattcattcttctg |
45870011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 90 - 346
Target Start/End: Complemental strand, 45981083 - 45980826
Alignment:
| Q |
90 |
ttttctgattaaaattatcaacaaattattacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagagactg |
189 |
Q |
| |
|
|||||||||| ||||||| |||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| || ||||| | |
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| T |
45981083 |
ttttctgattgaaattattaacaaactattagctaatattatatgttgaactttaagtcagtagatttttacatttatggttgtgttcctgcagagatta |
45980984 |
T |
|
| Q |
190 |
tgacaaccgatt-agaacttcgaatgaagatgggaaaggttgataccaacatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataa |
288 |
Q |
| |
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||||||||| | |||||||| | | ||||| |||||| | ||||||| |||||||| ||| |||||||||||||||||||||| |||||||||||| |
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| T |
45980983 |
tgacaaccgcctcagaacttcaactcaagataggaaagctaaccaccaacaagattgaagggaccggaaaaatgaaagcaaaaaggattgacaacaataa |
45980884 |
T |
|
| Q |
289 |
aatggacatttctgctatatatgcttccaaaggtaaccaaaatatcattcattgttct |
346 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
45980883 |
aatggacatttctgctatatatgcttctaaaggtaaccaaaatattattcattgttct |
45980826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 237 - 348
Target Start/End: Complemental strand, 45965089 - 45964978
Alignment:
| Q |
237 |
acatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataaaatggacatttctgctatatatgcttccaaaggtaaccaaaatatcat |
336 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45965089 |
acatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataaaatggacatttctgctatatatgcttccaaaggtaaccaaaatatcat |
45964990 |
T |
|
| Q |
337 |
tcattgttctga |
348 |
Q |
| |
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|||||||||||| |
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| T |
45964989 |
tcattgttctga |
45964978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 87 - 232
Target Start/End: Complemental strand, 45970131 - 45969985
Alignment:
| Q |
87 |
ttattttctgattaaaattatcaacaaattattacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagaga |
186 |
Q |
| |
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|||||||||||||||||||| ||| ||||||||| |||| ||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
45970131 |
ttattttctgattaaaattaacaaaaaattattagctaacgttatatgttaaactttaagtcagtagatttttacatttatgattgtgttcctgtagaga |
45970032 |
T |
|
| Q |
187 |
ctgtgacaa-ccgattagaacttcgaatgaagatgggaaaggttgat |
232 |
Q |
| |
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| |||||| || | |||||||||||||||||||||||||||||| |
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|
| T |
45970031 |
ttatgacaaccccctcggaacttcgaatgaagatgggaaaggttgat |
45969985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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