View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1948_low_17 (Length: 255)

Name: NF1948_low_17
Description: NF1948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1948_low_17
NF1948_low_17
[»] scaffold0557 (1 HSPs)
scaffold0557 (128-237)||(6624-6733)
[»] chr4 (6 HSPs)
chr4 (128-237)||(52374445-52374554)
chr4 (128-237)||(19111874-19111983)
chr4 (128-237)||(43593386-43593495)
chr4 (141-237)||(50377517-50377613)
chr4 (128-237)||(18811082-18811191)
chr4 (182-237)||(43593642-43593697)
[»] chr6 (15 HSPs)
chr6 (128-238)||(14463679-14463789)
chr6 (131-237)||(15906862-15906968)
chr6 (128-237)||(18715462-18715571)
chr6 (128-237)||(23160556-23160665)
chr6 (131-237)||(20025532-20025640)
chr6 (128-237)||(18767513-18767624)
chr6 (128-227)||(21393107-21393206)
chr6 (131-237)||(31569481-31569587)
chr6 (128-230)||(20881762-20881860)
chr6 (128-230)||(21683367-21683465)
chr6 (167-237)||(14602804-14602875)
chr6 (74-104)||(32616921-32616951)
chr6 (59-104)||(8909956-8910001)
chr6 (184-237)||(18801278-18801331)
chr6 (62-102)||(17724573-17724613)
[»] chr8 (8 HSPs)
chr8 (128-237)||(7964712-7964821)
chr8 (128-237)||(8223919-8224027)
chr8 (128-237)||(22932233-22932341)
chr8 (132-237)||(43974458-43974563)
chr8 (128-237)||(44967610-44967719)
chr8 (128-230)||(16046903-16047005)
chr8 (168-237)||(13586115-13586184)
chr8 (56-96)||(29634535-29634575)
[»] chr5 (6 HSPs)
chr5 (128-237)||(42882834-42882942)
chr5 (132-237)||(35329372-35329477)
chr5 (132-233)||(38925633-38925734)
chr5 (128-237)||(35328975-35329083)
chr5 (128-189)||(22545579-22545638)
chr5 (67-104)||(38925460-38925497)
[»] chr1 (9 HSPs)
chr1 (128-237)||(42958459-42958568)
chr1 (128-237)||(7487168-7487277)
chr1 (132-233)||(46352073-46352174)
chr1 (128-237)||(46757807-46757917)
chr1 (132-233)||(18504933-18505034)
chr1 (141-237)||(15723064-15723160)
chr1 (128-187)||(26703836-26703895)
chr1 (128-237)||(19193580-19193678)
chr1 (200-237)||(44201499-44201536)
[»] scaffold0760 (1 HSPs)
scaffold0760 (128-237)||(4-113)
[»] scaffold0214 (2 HSPs)
scaffold0214 (128-237)||(21900-22009)
scaffold0214 (137-237)||(29021-29121)
[»] scaffold0041 (1 HSPs)
scaffold0041 (128-237)||(32037-32146)
[»] chr2 (6 HSPs)
chr2 (128-237)||(25417271-25417380)
chr2 (128-227)||(5783267-5783366)
chr2 (135-237)||(13364326-13364428)
chr2 (128-180)||(29468515-29468567)
chr2 (128-228)||(44481517-44481617)
chr2 (56-105)||(24049109-24049158)
[»] chr7 (6 HSPs)
chr7 (128-237)||(39702905-39703014)
chr7 (132-233)||(3568706-3568807)
chr7 (141-237)||(1966498-1966594)
chr7 (128-233)||(12315015-12315120)
chr7 (128-237)||(18535856-18535965)
chr7 (128-198)||(48520156-48520226)
[»] chr3 (4 HSPs)
chr3 (128-236)||(7567158-7567266)
chr3 (59-109)||(6079869-6079919)
chr3 (62-104)||(21972668-21972710)
chr3 (62-104)||(21995099-21995141)
[»] scaffold0159 (1 HSPs)
scaffold0159 (128-227)||(36730-36829)
[»] scaffold0283 (1 HSPs)
scaffold0283 (128-237)||(13744-13853)
[»] scaffold0590 (1 HSPs)
scaffold0590 (128-227)||(9216-9315)
[»] scaffold0054 (1 HSPs)
scaffold0054 (128-233)||(49867-49976)
[»] scaffold0726 (1 HSPs)
scaffold0726 (182-237)||(5496-5551)
[»] scaffold0039 (1 HSPs)
scaffold0039 (56-104)||(84225-84273)


Alignment Details
Target: scaffold0557 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 6733 - 6624
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6733 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 6634  T
Q  228 ttacattttt 237  Q
    ||||||||||    
T  6633 ttacattttt 6624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 52374554 - 52374445
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52374554 tttcatgcatattcgtcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 52374455  T
Q  228 ttacattttt 237  Q
    ||||||||||    
T  52374454 ttacattttt 52374445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 19111874 - 19111983
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  19111874 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactctgttttaaagaagtgcatgaattacctatc 19111973  T
Q  228 ttacattttt 237  Q
     |||||||||    
T  19111974 gtacattttt 19111983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 43593386 - 43593495
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  43593386 tttcatgcatattcatcctccatagatcgatgactatgcatcacaaaactaagtatatattaagtaactccatgttaaagaagtgcatgaattacatatc 43593485  T
Q  228 ttacattttt 237  Q
    ||| ||||||    
T  43593486 ttatattttt 43593495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 141 - 237
Target Start/End: Complemental strand, 50377613 - 50377517
Alignment:
Q  141 catcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatcttacattttt 237  Q
    ||||||||||||||||||| |||||||||  ||||||||||||||||||||||||| | | | | ||||||||||||||||| ||||||||||||||    
T  50377613 catcctccatagatagatgtgtatgcatcttaaaactaagtatatattaagtaacttcatctcagagaagtgcatgaattacatatcttacattttt 50377517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 18811082 - 18811191
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    ||||||||||||||||  | | || |||||||||||||||||||||||||||||| ||  ||| ||||||| ||||| ||||||||||| |||| |||||    
T  18811082 tttcatgcatattcatatttcttatatagatgagtatgcatcacaaaactaagtaaatcgtaaataactccatgttagagaagtgcatgtattatctatc 18811181  T
Q  228 ttacattttt 237  Q
    ||| ||||||    
T  18811182 ttatattttt 18811191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 43593642 - 43593697
Alignment:
Q  182 atatattaagtaactccgtgttaaagaagtgcatgaattacctatcttacattttt 237  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  43593642 atatattaagtaactccatgttaaagaagtgcatgaattacatatcttacattttt 43593697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 128 - 238
Target Start/End: Complemental strand, 14463789 - 14463679
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14463789 tttcatgcatattcatcctccatagatagatgagtatgcttcacaaaactaagtatatattaagtaactccgtgttaaagaagtgaatgaattacctatc 14463690  T
Q  228 ttacatttttg 238  Q
    |||||||||||    
T  14463689 ttacatttttg 14463679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 131 - 237
Target Start/End: Original strand, 15906862 - 15906968
Alignment:
Q  131 catgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatctta 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15906862 catgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacttatctta 15906961  T
Q  231 cattttt 237  Q
    |||||||    
T  15906962 cattttt 15906968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 18715571 - 18715462
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  18715571 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatgttaagtaacttcgtgttaaagaagtgcatgaattacctatc 18715472  T
Q  228 ttacattttt 237  Q
    ||||||||||    
T  18715471 ttacattttt 18715462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 23160556 - 23160665
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||| |||||| ||||    
T  23160556 tttcatgtatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaacttcatgtcaaagaagtgcataaattacatatc 23160655  T
Q  228 ttacattttt 237  Q
    ||||||||||    
T  23160656 ttacattttt 23160665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 131 - 237
Target Start/End: Original strand, 20025532 - 20025640
Alignment:
Q  131 catgcatattcatcctccatagatagatgagtatgcatcacaaaactaag--tatatattaagtaactccgtgttaaagaagtgcatgaattacctatct 228  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  20025532 catgtatattcatccttcatagatagatgagtatgcatcacaaaactaagtatatatattaagtaactccatgttagagaagtgcatgaattacatatct 20025631  T
Q  229 tacattttt 237  Q
    |||||||||    
T  20025632 tacattttt 20025640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 18767513 - 18767624
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaag--tatatattaagtaactccgtgttaaagaagtgcatgaattaccta 225  Q
    |||||||||||||||||  || |||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||| ||||||||||||||| ||    
T  18767513 tttcatgcatattcatctaccctagatagatgagtatgcatcacaaaactaagtatatatattaagtaactccatgttaaaaaagtgcatgaattacata 18767612  T
Q  226 tcttacattttt 237  Q
    ||||||||||||    
T  18767613 tcttacattttt 18767624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 21393107 - 21393206
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||| || |||||||||||| ||||    
T  21393107 tttcatgcatattcatcctccatatatagatgagtatgcatcacaaaactaactatatattaagtaactccatgttaaataaatgcatgaattacatatc 21393206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 131 - 237
Target Start/End: Complemental strand, 31569587 - 31569481
Alignment:
Q  131 catgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatctta 230  Q
    |||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||| |||||| |||||||    
T  31569587 catgtatattcatctttcatagataaatgagtatgcatcacaaaactaagtatatattaagtaactccatgtcagagaagtgcataaattacatatctta 31569488  T
Q  231 cattttt 237  Q
    |||||||    
T  31569487 cattttt 31569481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 230
Target Start/End: Original strand, 20881762 - 20881860
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    ||||||||||||  ||||| ||||||||||||||| |||||||||||||||||||||||||| | ||||   |||||| |||| ||||||||||| ||||    
T  20881762 tttcatgcatat--atcctacatagatagatgagtttgcatcacaaaactaagtatatattatgcaact--atgttaaggaagcgcatgaattacatatc 20881857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 230
Target Start/End: Complemental strand, 21683465 - 21683367
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    ||||||||||||  ||||| ||||||||||||||| |||||||||||||||||||||||||| | ||||   |||||| |||| ||||||||||| ||||    
T  21683465 tttcatgcatat--atcctacatagatagatgagtttgcatcacaaaactaagtatatattatgcaact--atgttaaggaagcgcatgaattacatatc 21683370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 14602804 - 14602875
Alignment:
Q  167 atcacaaaactaagtatatattaagtaactccgtgttaaa-gaagtgcatgaattacctatcttacattttt 237  Q
    |||||||||| ||||||||||||||||||| | ||||||| |||||||||| ||||||||||||||||||||    
T  14602804 atcacaaaaccaagtatatattaagtaacttcatgttaaaagaagtgcatgtattacctatcttacattttt 14602875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 104
Target Start/End: Complemental strand, 32616951 - 32616921
Alignment:
Q  74 gcgtagtagaaaaagcggacagacgggcacg 104  Q
    |||||||||||||||||||||||||||||||    
T  32616951 gcgtagtagaaaaagcggacagacgggcacg 32616921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 8909956 - 8910001
Alignment:
Q  59 tagatatgtgtgtttgcgtagtagaaaaagcggacagacgggcacg 104  Q
    ||||||| || ||||||| |||||||||||||| ||||||||||||    
T  8909956 tagatatatgcgtttgcgcagtagaaaaagcgggcagacgggcacg 8910001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 237
Target Start/End: Original strand, 18801278 - 18801331
Alignment:
Q  184 atattaagtaactccgtgttaaagaagtgcatgaattacctatcttacattttt 237  Q
    |||||| |||||||| |||||||||| ||||||||||||  ||||| |||||||    
T  18801278 atattacgtaactccatgttaaagaaatgcatgaattacacatctttcattttt 18801331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 17724573 - 17724613
Alignment:
Q  62 atatgtgtgtttgcgtagtagaaaaagcggacagacgggca 102  Q
    |||| |||||| ||| |||||||||||||||||||||||||    
T  17724573 atatatgtgttagcgcagtagaaaaagcggacagacgggca 17724613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 9e-51; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 7964712 - 7964821
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7964712 tttcatgcatattcatcctccatagataaatgagtatgcatcacaaagctaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 7964811  T
Q  228 ttacattttt 237  Q
    ||||||||||    
T  7964812 ttacattttt 7964821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 8224027 - 8223919
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  8224027 tttcatgtatattcatcctccatagatagatgattatgcatcacaaaactaaatatatattaagtaactccgtgttaaa-aagtgcatgaattacctatc 8223929  T
Q  228 ttacattttt 237  Q
    ||||||||||    
T  8223928 ttacattttt 8223919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 22932341 - 22932233
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||| ||||||| ||||||||||||||||||||||| ||||    
T  22932341 tttcatgcatattcatcctcaatagatagatgagtatgcatcacaaa-ctaagtatgtattaaataactccatgttaaagaagtgcatgaattacgtatc 22932243  T
Q  228 ttacattttt 237  Q
    |||| |||||    
T  22932242 ttactttttt 22932233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 43974458 - 43974563
Alignment:
Q  132 atgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatcttac 231  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||| ||||||||||||||||| ||| | ||||||||    
T  43974458 atgcatattcatcctccatagatagatgagtatacatcacaaaactacatatatattaagtaactccatgttaaagaagtgcatggattgcatatcttac 43974557  T
Q  232 attttt 237  Q
    ||||||    
T  43974558 attttt 43974563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 44967719 - 44967610
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||| ||| ||||    
T  44967719 tttcatgcatattcatcctccataggtaaatgagtatgcatcacaaaactaagtatatattaagtaactccatgtcatagaagtgcatgaaatacatatc 44967620  T
Q  228 ttacattttt 237  Q
    ||| ||||||    
T  44967619 ttatattttt 44967610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 128 - 230
Target Start/End: Original strand, 16046903 - 16047005
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    |||||||  ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| | ||| |||||||||||| |||||| ||||    
T  16046903 tttcatgtgtattcatcctccatagatagatgggtatgcatcacaaagctaagtatatattaagtaacttcatgtcaaagaagtgcataaattacatatc 16047002  T
Q  228 tta 230  Q
    |||    
T  16047003 tta 16047005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 13586115 - 13586184
Alignment:
Q  168 tcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatcttacattttt 237  Q
    ||||||| |||||||| |||||| ||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  13586115 tcacaaacctaagtatgtattaaataactccatgttaaagaagtgcatgaattacatatcttatattttt 13586184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 29634535 - 29634575
Alignment:
Q  56 gtatagatatgtgtgtttgcgtagtagaaaaagcggacaga 96  Q
    ||||||| ||||||||||||| |||||||||||| ||||||    
T  29634535 gtatagaaatgtgtgtttgcgcagtagaaaaagcagacaga 29634575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 42882834 - 42882942
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42882834 tttcatgcatattcatcctccatagatagatgattatgcatcacaaaactaagtatatattaagtaactccgtgttaaa-aagtgcatgaattacctatc 42882932  T
Q  228 ttacattttt 237  Q
    ||||||||||    
T  42882933 ttacattttt 42882942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 35329477 - 35329372
Alignment:
Q  132 atgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatcttac 231  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||| ||| ||||||||    
T  35329477 atgcatattcatcctccataggtaaatgagtatgcatcacaaaactaagtatatattaagtaactccatgtcatagaagtgcatgaaatacatatcttac 35329378  T
Q  232 attttt 237  Q
    ||||||    
T  35329377 attttt 35329372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 38925734 - 38925633
Alignment:
Q  132 atgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatcttac 231  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||  | ||||||||||||||||||||||| ||||||||    
T  38925734 atgcatattcatcctccatagatagatgaggatgcatcacaaaacaaagtatatattaagtaacatcatgttaaagaagtgcatgaattacatatcttac 38925635  T
Q  232 at 233  Q
    ||    
T  38925634 at 38925633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 35329083 - 35328975
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||| ||| | ||||||||||||| ||| ||||    
T  35329083 tttcatgcatattcatcctccataggtaaatgagtatgcatcacaaaac-aagtatatattaagtaactccatgtcatagaagtgcatgaaatacatatc 35328985  T
Q  228 ttacattttt 237  Q
    ||||||||||    
T  35328984 ttacattttt 35328975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 22545579 - 22545638
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatatta 189  Q
    ||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  22545579 tttcatgcatat--atcctacatagatagatgagtttgcatcacaaaactaagtatatatta 22545638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 38925497 - 38925460
Alignment:
Q  67 tgtgtttgcgtagtagaaaaagcggacagacgggcacg 104  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  38925497 tgtgttagcgtagtagaaagagcggacagacgggcacg 38925460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 42958459 - 42958568
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||    
T  42958459 tttcatgcatattcatcctccatagttagacgagtatgcatcacaaaactaattatatattaagtaactccatgttaaagaagtgcatgaattacatatc 42958558  T
Q  228 ttacattttt 237  Q
    ||||||||||    
T  42958559 ttacattttt 42958568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 7487168 - 7487277
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||| || |    
T  7487168 tttcatgtatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccatgtcaaagaagtgcataaattacataac 7487267  T
Q  228 ttacattttt 237  Q
    ||||||||||    
T  7487268 ttacattttt 7487277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 46352174 - 46352073
Alignment:
Q  132 atgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatcttac 231  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||| ||||||||    
T  46352174 atgcatattcatcctccatagatagatgaggatgcatcacaaaacaaagtatatattaagtaacaccatgttaaagaagtgcatgaattacatatcttac 46352075  T
Q  232 at 233  Q
    ||    
T  46352074 at 46352073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 46757807 - 46757917
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaag-tatatattaagtaactccgtgttaaagaagtgcatgaattacctat 226  Q
    ||||||||||||||||| ||| ||||||||||||||||||| |||||||||   |||||||||||||||||| ||||||||||||||||||||||| |||    
T  46757807 tttcatgcatattcatcttccctagatagatgagtatgcataacaaaactagtatatatattaagtaactccatgttaaagaagtgcatgaattacatat 46757906  T
Q  227 cttacattttt 237  Q
    |||||||||||    
T  46757907 cttacattttt 46757917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 18505034 - 18504933
Alignment:
Q  132 atgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatcttac 231  Q
    |||||||||||||||||||||||||||||||||| | || |||||||||||||||||| |||||||| |||||||||| |||||||||||| ||||||||    
T  18505034 atgcatattcatcctccatagatagatgagtatgtaccataaaactaagtatatattacgtaactccatgttaaagaaatgcatgaattacatatcttac 18504935  T
Q  232 at 233  Q
    ||    
T  18504934 at 18504933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 141 - 237
Target Start/End: Original strand, 15723064 - 15723160
Alignment:
Q  141 catcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatcttacattttt 237  Q
    ||||||||||||||||||| |||||||||  ||||||||||||||||||||||||| | | | | ||||||||||||||||| ||||||||||||||    
T  15723064 catcctccatagatagatgtgtatgcatcttaaaactaagtatatattaagtaacttcatctcatagaagtgcatgaattacatatcttacattttt 15723160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 26703895 - 26703836
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatat 187  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26703895 tttcatgcatattcatcctccatagaaagatgagtatgcatcacaaaactaagtatatat 26703836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 19193580 - 19193678
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    |||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||           ||| ||||||||||||||||||||||| ||||    
T  19193580 tttcatgcatattcatcctctatgtatagatgagtatgcatcacaaaactaagtata-----------tccatgttaaagaagtgcatgaattacatatc 19193668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 44201499 - 44201536
Alignment:
Q  200 tgttaaagaagtgcatgaattacctatcttacattttt 237  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  44201499 tgttaaagaagtgcatgaattacatatcttacattttt 44201536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 4 - 113
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| || ||||    
T  4 tttcatgcatattcatcctccatagttagacgagtatgcatcacaaaactaattatatattaagtaactccatgttaaagaagtgcatgaataacatatc 103  T
Q  228 ttacattttt 237  Q
    ||||||||||    
T  104 ttacattttt 113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 22009 - 21900
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||| ||||||| ||||||||||||||||||||||| ||||    
T  22009 tttcatgcatattcatccttcatagatagatgagtatgcatcacaaacctaagtatgtattaaataactccatgttaaagaagtgcatgaattacatatc 21910  T
Q  228 ttacattttt 237  Q
    ||||||||||    
T  21909 ttacattttt 21900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 29021 - 29121
Alignment:
Q  137 tattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatcttacatttt 236  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||| |||||| || ||||||||||    
T  29021 tattcatcctccataggtagatgagtatgcatcacaaaactaagtatatattaagtaacttcatgtcaaagaagtgcataaattacataacttacatttt 29120  T
Q  237 t 237  Q
    |    
T  29121 t 29121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 32037 - 32146
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| ||||||| ||||||||||||||||||||||| ||||    
T  32037 tttcatgcatattcatcctccatagatagatgagtgtgcatcacaaacctaagtatgtattaaataactccatgttaaagaagtgcatgaattacatatc 32136  T
Q  228 ttacattttt 237  Q
    ||||||||||    
T  32137 ttacattttt 32146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 25417380 - 25417271
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||| |||| ||||    
T  25417380 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaacctaagtatgtattaaataactccatgttaaagaagtgcatgagttacgtatc 25417281  T
Q  228 ttacattttt 237  Q
    ||||||||||    
T  25417280 ttacattttt 25417271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 5783267 - 5783366
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||| ||||    
T  5783267 tttcatgcatattcatcctccatatatagatgagtatgcatcacaaaactaagtatatattaagtaacttcatgttaaagaaatgcatgaattacatatc 5783366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 13364326 - 13364428
Alignment:
Q  135 catattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatcttacatt 234  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||| ||| | |||||||||||    
T  13364326 catattcatcctccatatatagatgagtatgcatcacaaaactacgtatatattaattaactccatgttaaagaagtgcatggattgcatatcttacatt 13364425  T
Q  235 ttt 237  Q
    |||    
T  13364426 ttt 13364428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 29468515 - 29468567
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaag 180  Q
    ||||||| |||||||||||||||| ||| ||||||||||||||||||||||||    
T  29468515 tttcatggatattcatcctccataaatatatgagtatgcatcacaaaactaag 29468567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 228
Target Start/End: Complemental strand, 44481617 - 44481517
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    ||||||||||||||||  | | || |||||||||||||||| ||||||||||||| ||  ||| ||||| | ||||| ||||||||||| |||| |||||    
T  44481617 tttcatgcatattcatatttcttatatagatgagtatgcattacaaaactaagtaaatcgtaaataacttcatgttagagaagtgcatgtattatctatc 44481518  T
Q  228 t 228  Q
    |    
T  44481517 t 44481517  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 24049158 - 24049109
Alignment:
Q  56 gtatagatatgtgtgtttgcgtagtagaaaaagcggacagacgggcacgc 105  Q
    ||||||| ||||| ||||||||||||||||||||||||| ||||| ||||    
T  24049158 gtatagacatgtgcgtttgcgtagtagaaaaagcggacaaacgggtacgc 24049109  T

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Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 39702905 - 39703014
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| |||||| || |    
T  39702905 tttcatgtatattcatcctccatagatagatgagtatgcattacaaaactaagtatatattaagtaactccatgtcaaagaagtgcataaattacataac 39703004  T
Q  228 ttacattttt 237  Q
    ||||||||||    
T  39703005 ttacattttt 39703014  T

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Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 3568807 - 3568706
Alignment:
Q  132 atgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatcttac 231  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||  | ||||||||||||||||||||||| ||||||||    
T  3568807 atgcatattcatcctccatagatagatgaggatgcatcacaaaacaaagtatatattaagtaacatcatgttaaagaagtgcatgaattacatatcttac 3568708  T
Q  232 at 233  Q
    ||    
T  3568707 at 3568706  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 141 - 237
Target Start/End: Complemental strand, 1966594 - 1966498
Alignment:
Q  141 catcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatcttacattttt 237  Q
    ||||||||||||||||||| |||||||||  ||||||||||||||||||||||||| | | | | ||||||||||||||||| ||||||||||||||    
T  1966594 catcctccatagatagatgtgtatgcatcttaaaactaagtatatattaagtaacttcatctcagagaagtgcatgaattacatatcttacattttt 1966498  T

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Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 128 - 233
Target Start/End: Complemental strand, 12315120 - 12315015
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    ||||||||||||||||  | | || |||||||||||||||||||||||||||||| ||  ||| ||||||| ||||| ||||||||||| |||| |||||    
T  12315120 tttcatgcatattcatatttcttatatagatgagtatgcatcacaaaactaagtaaatcgtaaataactccatgttagagaagtgcatgtattatctatc 12315021  T
Q  228 ttacat 233  Q
    ||||||    
T  12315020 ttacat 12315015  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 18535965 - 18535856
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    ||||||||||||||||  | | || |||||||||||||||||||||||||||||| ||  ||| ||||| | ||||| | ||||||||| |||| |||||    
T  18535965 tttcatgcatattcatatttcttatatagatgagtatgcatcacaaaactaagtaaatcgtaaataacttcatgttagacaagtgcatgtattatctatc 18535866  T
Q  228 ttacattttt 237  Q
    ||||||||||    
T  18535865 ttacattttt 18535856  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 48520226 - 48520156
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactcc 198  Q
    |||||| |||||| ||| |||||||||||||||||||||||| ||||||||||||| ||||| ||||||||    
T  48520226 tttcatccatattaatcttccatagatagatgagtatgcatcgcaaaactaagtatgtattaggtaactcc 48520156  T

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Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 128 - 236
Target Start/End: Complemental strand, 7567266 - 7567158
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  7567266 tttcatgcatattcatccaccatagatagatgagtatgcatcccaaacctaagtatatattaagtaaatccatgttaaagaagtgcatgaattacatatc 7567167  T
Q  228 ttacatttt 236  Q
    ||| |||||    
T  7567166 ttatatttt 7567158  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 6079869 - 6079919
Alignment:
Q  59 tagatatgtgtgtttgcgtagtagaaaaagcggacagacgggcacgcaagt 109  Q
    ||||||| || ||| ||| ||||||||||||||||||||||||||| ||||    
T  6079869 tagatatatgcgttagcgcagtagaaaaagcggacagacgggcacggaagt 6079919  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 21972710 - 21972668
Alignment:
Q  62 atatgtgtgtttgcgtagtagaaaaagcggacagacgggcacg 104  Q
    |||| |||||| ||||||||||||||||||||| |||||||||    
T  21972710 atatatgtgttagcgtagtagaaaaagcggacaaacgggcacg 21972668  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 21995141 - 21995099
Alignment:
Q  62 atatgtgtgtttgcgtagtagaaaaagcggacagacgggcacg 104  Q
    |||| |||||| ||||||||||||||||||||| |||||||||    
T  21995141 atatatgtgttagcgtagtagaaaaagcggacaaacgggcacg 21995099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 36730 - 36829
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||| ||||    
T  36730 tttcatgcatattcatcctccatatatagatgagtatgcatcacaaaactaagtatatattaagtaacttcatgttaaagaaatgcatgaattacatatc 36829  T

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Target: scaffold0283 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 13853 - 13744
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||| ||| ||||    
T  13853 tttcatgcatattcatcctccataggtaaatgagtatgcatcacaaaactaagtatatattaagtaactccatgtcatagaagtgcatgaaatacatatc 13754  T
Q  228 ttacattttt 237  Q
    ||| ||||||    
T  13753 ttatattttt 13744  T

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Target: scaffold0590 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 9315 - 9216
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgttaaagaagtgcatgaattacctatc 227  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||| || |||||||||||| ||||    
T  9315 tttcatgcatattcatcctccatatatagatgagtatgcatcacaaaactaactatatattaagtaactccatgttaaataaatgcatgaattacatatc 9216  T

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Target: scaffold0054 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 128 - 233
Target Start/End: Complemental strand, 49976 - 49867
Alignment:
Q  128 tttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaactccgtgtt----aaagaagtgcatgaattacc 223  Q
    ||||| |||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| || ||||    |||||||||||||||||||     
T  49976 tttcacgcatattcatcctccatagatatatgaggatgcatcacaaaacaaagtatatattaagtaacaccatgttaaagaaagaagtgcatgaattaca 49877  T
Q  224 tatcttacat 233  Q
    ||||||||||    
T  49876 tatcttacat 49867  T

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Target: scaffold0726 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 5496 - 5551
Alignment:
Q  182 atatattaagtaactccgtgttaaagaagtgcatgaattacctatcttacattttt 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5496 atatattaagtaactccgtgttaaagaagtgcatgaattacctatcttacattttt 5551  T

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Target: scaffold0039 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 84225 - 84273
Alignment:
Q  56 gtatagatatgtgtgtttgcgtagtagaaaaagcggacagacgggcacg 104  Q
    ||||||| ||||| ||||||| | ||||||||||||||||| |||||||    
T  84225 gtatagaaatgtgcgtttgcgcaatagaaaaagcggacagatgggcacg 84273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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