View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1948_low_2 (Length: 595)

Name: NF1948_low_2
Description: NF1948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1948_low_2
NF1948_low_2
[»] chr7 (3 HSPs)
chr7 (10-577)||(28216780-28217356)
chr7 (10-577)||(28237652-28238212)
chr7 (10-576)||(28232823-28233399)


Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 10 - 577
Target Start/End: Original strand, 28216780 - 28217356
Alignment:
Q  10 aagaatatcattggctatttttaatttttctttggttgcattcagttcgtctcggcggttgctttcatgtcccagtacagattgaaattggtccataatc 109  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  28216780 aagaatatcattggctattttcaatttttctttggttgcattcagttcgtctcggcggttgctttcatgtcccaatacagattgaaattggtccgtaatc 28216879  T
Q  110 accttcccaagtaaagcagagcg-----------ccacaagcatatcactagccttttccaacccagactccttcacctcctgcacatcttttgcgaagc 198  Q
    ||||||| |||||||||| ||||           |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  28216880 accttccgaagtaaagcacagcgaaggttgtatgccacaagcatctcactagccttttccaacccagactccttcacctcctgcacat-ttttgtgaagc 28216978  T
Q  199 ttagattgctgtccacaaaacctattccatcgaaactcctgtcccgcagcgatgctttatcagtctcttccattgggacacacgtcttctccttcttaat 298  Q
    |||||||||||||||||||||| |||||||| |||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28216979 ttagattgctgtccacaaaacccattccatcaaaacacctgtcccacagcgatgctttttcagtctcttccattgggacacacgtcttctccttcttaat 28217078  T
Q  299 ctttttcctagataaaggaagaaccaccttagaattgcatgcagcggcctcattgttcaaaaggtagtgcagcaataggttctgtgtctgaaagtgacgg 398  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||  |||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  28217079 ctttttcctaggtaaaggaagaaccaccttagaatcgcatgcagcggaatcattgttcaaa-ggtggtgcagcaataggttctgtgtctgaaagtgacgg 28217177  T
Q  399 tgacccctcctctgagttccccccaccttttctcttgagcttgcagattgtaacaccactaacgtccaattttgcttcagcggcaccagattgcaaaatt 498  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  28217178 tgacccctcctctgagtttcccccaccttttctcttgagcttgcagattgtaacaccactaacgtccaattttgcttcagcggcaccagattgcaaaact 28217277  T
Q  499 gtggctctcttttctctagcctttgccaaataggtcttgaactcggcgtcatttagcggtgacattcttcctacataac 577  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28217278 gtggctctcttttctctagcctttgccaaataggtcttgaactcggcgtcatttagcggagacattcttcctacataac 28217356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 10 - 577
Target Start/End: Original strand, 28237652 - 28238212
Alignment:
Q  10 aagaatatcattggctatttttaatttttctttggttgcattcagttcgtctcggcggttgctttcatgtcccagtacagattgaaattggtccataatc 109  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||    
T  28237652 aagaatatcattggctattttcaatttttctttggttgcattcagttcgtcttggcagttgctttcatgtcctagtacagattgaaattggtccataatc 28237751  T
Q  110 accttcccaagtaaagcagagcg-----------ccacaagcatatcactagccttttccaacccagactccttcacctcctgcacatcttttgcgaagc 198  Q
    |||||||||||||||||||||||           |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28237752 accttcccaagtaaagcagagcgaaggttgtacgccacaagcatctcactagctttttccaacccagactccttcacctcctgcacatcttttgcgaagc 28237851  T
Q  199 ttagattgctgtccacaaaacctattccatcgaaactcctgtcccgcagcgatgctttatcagtctcttccattgggacacacgtcttctccttcttaat 298  Q
     |||||| |||||||||||| | |||||||| || ||||  |||| |||||||||                ||||||||||| || ||||||||||||||    
T  28237852 atagatttctgtccacaaaatccattccatcaaacctcccatcccacagcgatgc----------------attgggacacaagt-ttctccttcttaat 28237934  T
Q  299 ctttttcctagataaaggaagaaccaccttagaattgcatgcagcggcctcattgttcaaaaggtagtgcagcaataggttctgtgtctgaaagtgacgg 398  Q
    | ||||||||| | ||||||||||  ||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||    
T  28237935 ccttttcctaggtgaaggaagaacagccttagaatcgcatgcagcggcctcattgttcaaa-ggttgtgcagcaataggttctgcgtctgaaagtgacgg 28238033  T
Q  399 tgacccctcctctgagttccccccaccttttctcttgagcttgcagattgtaacaccactaacgtccaattttgcttcagcggcaccagattgcaaaatt 498  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||  ||||||||||||| | |    
T  28238034 tgacccctcctttgagtttcccccaccttttctcttgagcttgcagattgcaacaccactaacgtccaagtttgcttcagcatcaccagattgcaacact 28238133  T
Q  499 gtggctctcttttctctagcctttgccaaataggtcttgaactcggcgtcatttagcggtgacattcttcctacataac 577  Q
    |||||||||||||||||| |||| ||||||||||||||||||||  | |||||||| || |||||||||||||||||||    
T  28238134 gtggctctcttttctctatccttcgccaaataggtcttgaactcctcttcatttagtggagacattcttcctacataac 28238212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 10 - 576
Target Start/End: Original strand, 28232823 - 28233399
Alignment:
Q  10 aagaatatcattggctatttttaatttttctttggttgcattcagttcgtctcggcggttgctttcatgtcccagtacagattgaaattggtccataatc 109  Q
    |||| |||||||||||||||| |||||| ||||||||||| ||||||||||| ||| |||||| | |||||||| || || ||| ||||||||| |||||    
T  28232823 aagagtatcattggctattttcaattttcctttggttgcaatcagttcgtcttggcagttgctatgatgtcccactaaagcttggaattggtccgtaatc 28232922  T
Q  110 accttcccaagtaaagcagagcg-----------ccacaagcatatcactagccttttccaacccagactccttcacctcctgcacatcttttgcgaagc 198  Q
    |||||||||||||||||||||||           ||||||| || |||| ||| |||||||||||||||||||||||||||||||| ||||||| |||||    
T  28232923 accttcccaagtaaagcagagcgaaggctgtacgccacaagaatctcaccagctttttccaacccagactccttcacctcctgcacgtcttttgtgaagc 28233022  T
Q  199 ttagattgctgtccacaaaacctattccatcgaaactcctgtcccgcagcgatgctttatcagtctcttccattgggacacacgtcttctccttcttaat 298  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| |||||||||| |||||||| |||||||||||||||| |||||||||||||||||    
T  28233023 ttagattgctgtccacaaaacccattccatcgaacctcctgtcccacagcgatgctatatcagtcccttccattgggacacaagtcttctccttcttaat 28233122  T
Q  299 ctttttcctagataaaggaagaaccaccttagaattgcatgcagcggcctcattgttcaaaaggtagtgcagcaataggttctgtgtctgaaagtgacgg 398  Q
    | ||||||||| | ||| ||||||||||||||||   |||||||| |||   |||||| ||| || ||||||||||||||||| ||||||||||||||||    
T  28233123 ccttttcctaggtgaagaaagaaccaccttagaaccacatgcagctgccatgttgttc-aaacgtggtgcagcaataggttctttgtctgaaagtgacgg 28233221  T
Q  399 tgacccctcctctgagttccccccaccttttctcttgagcttgcagattgtaacaccactaacgtccaattttgcttcagcggcaccagattgcaaaatt 498  Q
    || ||| | || |||| | || ||||||||||| ||||| |||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||      
T  28233222 tggcccattctttgagcttccgccaccttttcttttgagtttgcggattgtaacactactaacgtccaattttgcttcagcagcaccagattgcaaaacc 28233321  T
Q  499 gtggctctcttttctctagcctttgccaaataggtcttgaactcggcgtcatttagcggtgacattcttcctacataa 576  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| |||||    
T  28233322 gtggctctcttttctctagccttagccaaataggtcttgaactcggcttcatttagcggagacattcttcctgcataa 28233399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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