View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1948_low_20 (Length: 234)
Name: NF1948_low_20
Description: NF1948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1948_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 25484010 - 25483790
Alignment:
| Q |
1 |
ccttttcaaatcttgttcataccatattcaaatcttctttggggattagggtttaaaaccgttaattagggcttttttaaggtgagagattgactgtttt |
100 |
Q |
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| T |
25484010 |
ccttttcaaatcttgttcataccatattcaaatcttcttgggggattagggtttaaaaccgtttattagggcttttttaaggtgagagattgactgtttt |
25483911 |
T |
|
| Q |
101 |
ttcatgaaataaaaccgtcaatcacattgagtattattattaacatcattaaatcgataatttgttggttttattttactatttttgttctttcataatt |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25483910 |
ttcatgaaatcaaaccgtcaatcacattgagtattattattaacatcattaaatcgataatttgttggttttattttactatttttgttctttcataatt |
25483811 |
T |
|
| Q |
201 |
ctcggttgtggtctctgttag |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
25483810 |
ctcggttgtggtctctgttag |
25483790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 25859990 - 25860210
Alignment:
| Q |
1 |
ccttttcaaatcttgttcataccatattcaaatcttctttggggattagggtttaaaaccgttaattagggcttttttaaggtgagagattgactgtttt |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25859990 |
ccttttcaaatcttgttcataccatattcaaatcttcttgggggattagggtttaaaaccgttaattagggcttttttaaggtgagagattgactgtttt |
25860089 |
T |
|
| Q |
101 |
ttcatgaaataaaaccgtcaatcacattgagtattattattaacatcattaaatcgataatttgttggttttattttactatttttgttctttcataatt |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
25860090 |
ttcatgaaatcaaaccgtcaatcacattgagtattattattaacatcattaaatcgataatttgttggttttattttactatttttgttctttcataaat |
25860189 |
T |
|
| Q |
201 |
ctcggttgtggtctctgttag |
221 |
Q |
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||||||||||||||||||||| |
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| T |
25860190 |
ctcggttgtggtctctgttag |
25860210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 25604126 - 25604163
Alignment:
| Q |
41 |
ggggattagggtttaaaaccgttaattagggctttttt |
78 |
Q |
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|||||||||||||||||||| |||||| |||||||||| |
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| T |
25604126 |
ggggattagggtttaaaacctttaattggggctttttt |
25604163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 25886231 - 25886268
Alignment:
| Q |
41 |
ggggattagggtttaaaaccgttaattagggctttttt |
78 |
Q |
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|||||||||||||||||||| |||||| |||||||||| |
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| T |
25886231 |
ggggattagggtttaaaacctttaattggggctttttt |
25886268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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