View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1948_low_5 (Length: 508)
Name: NF1948_low_5
Description: NF1948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1948_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 103; Significance: 5e-51; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 19923759 - 19923588
Alignment:
| Q |
19 |
gtcaaaaccaattcttcaatatttctcctgttaatcatgacactcctaccttcattaacttacttggagactttggaaaaaatcatgatcatcatcaggc |
118 |
Q |
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| T |
19923759 |
gtcaaaaccaattcttcaatatttctcctgttaataaggacactcctaccttctttaaattacttggagactttggagaaaatcatgatcatcatcaggc |
19923660 |
T |
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| Q |
119 |
aagatcatacatgatccctttgnnnnnnnnnnnnnnngttgtatataaatcaataaactcttttcttttccca |
191 |
Q |
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| T |
19923659 |
aagatcatacatgatccctttg-ttttttacttttttgttgtatataaatcaataaactcttttcttttccca |
19923588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 19939645 - 19939522
Alignment:
| Q |
17 |
aggtcaaaaccaattcttcaatatttctcctgttaatcatgacactcctaccttcattaacttacttggagactttggaaaaaatcatgatcatcatcag |
116 |
Q |
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| T |
19939645 |
aggtcaaaacaaattcttcaatatttctcctgttaatcaggacactcctacattctttaaattacttggagactttggagaaaatcatgatcatcatcag |
19939546 |
T |
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| Q |
117 |
gcaagatcatacatgatccctttg |
140 |
Q |
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| T |
19939545 |
gcaagatcatacatgatccctttg |
19939522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 381 - 498
Target Start/End: Complemental strand, 19923458 - 19923341
Alignment:
| Q |
381 |
aagacaacaatgatgatcatgataattgaacatcggtccatgttttaattatatatagatttgatgaattaatttgaaattaatttgatctttatacaat |
480 |
Q |
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| T |
19923458 |
aagacaacaatgatgttcatgataattaaacatcgatccatgttttaattatatatagatttgatgaattaatatgaaattaatttgatctttatataat |
19923359 |
T |
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| Q |
481 |
gatataaactggcctatg |
498 |
Q |
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| T |
19923358 |
gatataagctggcctatg |
19923341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 323 - 457
Target Start/End: Complemental strand, 19939333 - 19939188
Alignment:
| Q |
323 |
agatgttctaattaatatatgatctatatat--ccaccatagtaattgtgttgtttt--aataagacaacaat-------gatgatcatgataattgaac |
411 |
Q |
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| T |
19939333 |
agatgttataattaatatatgatctatatatatccaccatagtaattgtgttgttttgaaagaggacaacgtttggtggtgatgatcatgataattgaac |
19939234 |
T |
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| Q |
412 |
atcggtccatgttttaattatatatagatttgatgaattaatttga |
457 |
Q |
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| T |
19939233 |
atcgattcatgttttaattgtatatagatttgatgaattaatttga |
19939188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 254 - 291
Target Start/End: Complemental strand, 19923526 - 19923489
Alignment:
| Q |
254 |
atgatgacactttcactaaactgtttgtttgaatgaaa |
291 |
Q |
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| T |
19923526 |
atgatgacacttttactaaactgtttgtttgaatgaaa |
19923489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 4240559 - 4240461
Alignment:
| Q |
17 |
aggtcaaaaccaattcttcaatatttctcctgttaatcatgacactcctaccttcattaacttacttggagactttggaaaaaatcatgatcatcatca |
115 |
Q |
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| T |
4240559 |
aggtcaaaaccaattcttcaatatttctcctgttaatcaggacactcctaccttctttaacttacttggagactttggagaaaactatgatcatcatca |
4240461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 417 - 498
Target Start/End: Complemental strand, 4240090 - 4240009
Alignment:
| Q |
417 |
tccatgttttaattatatatagatttgatgaattaatttgaaattaatttgatctttatacaatgatataaactggcctatg |
498 |
Q |
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| T |
4240090 |
tccatgttttaattatatatagatttgatgaattaatatgaaattaatttgatctttatataatgatataatttggcctatg |
4240009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 377
Target Start/End: Complemental strand, 4240280 - 4240228
Alignment:
| Q |
323 |
agatgttctaattaatatatgatctatatatccaccatagtaattgtgttgtttt |
377 |
Q |
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| T |
4240280 |
agatgttctaat--atatatgatctatatatccaccatagtaattgtgttctttt |
4240228 |
T |
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