View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1948_low_6 (Length: 505)
Name: NF1948_low_6
Description: NF1948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1948_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 37086606 - 37086368
Alignment:
| Q |
19 |
cgtaagacatccttgtcccatgataagttgttatttggatctgctaaggaagctgtacatggcctttcagagacaactcttaatggaaaagaaaatctaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37086606 |
cgtaagacatccttgtcccatgataagttgttatttggatctgctaaggaagctgtacatggcctttcagagacaactcttaatggaaaagaaaatctaa |
37086507 |
T |
|
| Q |
119 |
aatgtttaaattggagaaatgcttgtgggaaagatggtgttcttaccaatgcagttaaggtaatgatttttgtgtgccctcacctctttgattagaaccc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37086506 |
aatgtttaaattggagaaatgcttgtgggaaagatggtgttcttaccaatgcagttaaggtaatgatttttgtgtgccctcacctctttgattagaaccc |
37086407 |
T |
|
| Q |
219 |
ctttcatatatttagaaaaatccgtaaaactttggatgg |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37086406 |
ctttcatatatttagaaaaatccgtaaaactttgtatgg |
37086368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 322 - 494
Target Start/End: Complemental strand, 37086303 - 37086131
Alignment:
| Q |
322 |
acagacaaggataatgatggaaaaagagaggcttgaatggcttccgaatcatttaaagatgctgaagatggacaatgacttcgattcggttgaggaaagg |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37086303 |
acagacaaggataatgatggaaaaagagaggcttgaatggcttccgaatcatttaaagatgctgaagatggacaatgacttcgattcggttgaggaaagg |
37086204 |
T |
|
| Q |
422 |
gaatgttactattgcttctatgacttgcacctctctgctgttggttgcgagtgctttcctgacaactattcat |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37086203 |
gaatgttactattgcttctatgacttgcacctctctgctgttggttgcgagtgctttcctgacaactattcat |
37086131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 20675100 - 20675055
Alignment:
| Q |
142 |
tgtgggaaagatggtgttcttaccaatgcagttaaggtaatgattt |
187 |
Q |
| |
|
||||||||||||||||||||||| | ||| ||||||||||||||| |
|
|
| T |
20675100 |
tgtgggaaagatggtgttcttactatggcatttaaggtaatgattt |
20675055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University