View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1948_low_7 (Length: 434)
Name: NF1948_low_7
Description: NF1948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1948_low_7 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 34567100 - 34567533
Alignment:
| Q |
1 |
tcgatatgcctaatggatttgatgggttggttataagtactgcttttactttcatgttcatggattctgcatttttgtatgcagtttctaatgcttcaag |
100 |
Q |
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| T |
34567100 |
tcgatatgcctaatggatttgatgggttggttataagtactgcttttactttcatgttcatggattctgcatttttgtatgcagtttctaatgcttcaag |
34567199 |
T |
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| Q |
101 |
tgtgatttgaaaattgtttgaactatcacaatggattggaactatgtttacaccagttctccatctcaaatctctatcaaatctgcaaaatcaaaaaata |
200 |
Q |
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| T |
34567200 |
tgtgatttgaaaattgtttgagctatcacaatggattggaattatgtttacaccagttctccatctcaaatctctatcaaatctgcaaaatcaaaaaata |
34567299 |
T |
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| Q |
201 |
tatacattagtttaattttccaattattgtactaatattgtcgcgcgaattttatgcttagatgcttactcgtttcatcnnnnnnnnnaaaagattcaca |
300 |
Q |
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| T |
34567300 |
tatacattagtttaattttccaattattgtactaatattgtcgcgcgaattttatgcttagatgattactcgtttcatc-ttttttttaaaagattcaca |
34567398 |
T |
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| Q |
301 |
attttagt-ctcactaaatttggaaaaatggagaccatattttcgaatttagaaatacacgaaataaaatcatgaatcagtaaaaatagacgaccgaaaa |
399 |
Q |
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| T |
34567399 |
attttagtcctcactaaatttggaaaaatggagaccatattttcgaatttagaaatacacgaaataaaatcatgaattagtaaaaatagacggccgaaaa |
34567498 |
T |
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| Q |
400 |
tgcatttaagcaaatatattatagaatatattgta |
434 |
Q |
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| T |
34567499 |
tgcatttaagcaaaaatattatagaatatattgta |
34567533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 48 - 190
Target Start/End: Original strand, 42789474 - 42789616
Alignment:
| Q |
48 |
actttcatgttcatggattctgcatttttgtatgcagtttctaatgcttcaagtgtgatttgaaaattgtttgaactatcacaatggattggaactatgt |
147 |
Q |
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| T |
42789474 |
actttcatgttcattgattctgcttctttgtaagctgcttctaaagcttttggtgtaatttgaaaattgtttgatctgttgcagtgaattggcactatgt |
42789573 |
T |
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| Q |
148 |
ttacaccagttctccatctcaaatctctatcaaatctgcaaaa |
190 |
Q |
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| T |
42789574 |
ttacaccagttctccaccttaagtctctatcaaacctacaaaa |
42789616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 48 - 190
Target Start/End: Original strand, 42799012 - 42799155
Alignment:
| Q |
48 |
actttcatgttcatggattctgcatttttgtatgcagtttctaatgcttcaag-tgtgatttgaaaattgtttgaactatcacaatggattggaactatg |
146 |
Q |
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| T |
42799012 |
actttcatgttcattgattctgcttctttgtaagctgcttctaaagctttttggtgtaatttgaaaattgtttgatctgttgcagtgaattggcactatg |
42799111 |
T |
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| Q |
147 |
tttacaccagttctccatctcaaatctctatcaaatctgcaaaa |
190 |
Q |
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| T |
42799112 |
tttacaccagttctccaccttaagtctctatcaaacctacaaaa |
42799155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 1462339 - 1462267
Alignment:
| Q |
65 |
ttctgcatttttgtatgcagtttctaatgcttcaagtgtgatttgaaaattgtttgaactatcacaatggattg |
138 |
Q |
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| T |
1462339 |
ttctgcatttttgtatacaatttttaatgctt-aagtgtgatttgaaaattgtttgagctgtcacactggattg |
1462267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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