View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1948_low_8 (Length: 419)
Name: NF1948_low_8
Description: NF1948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1948_low_8 |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 14 - 302
Target Start/End: Original strand, 4194497 - 4194787
Alignment:
| Q |
14 |
aaatcacgcaaatagatggaaattataggcgacttatcacagcttccagctcagaaggggtgtaaa--tgatacgctggagcaaccttcgcaatgccaac |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||| |||| |
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| T |
4194497 |
aaatcacgcaaatagatggaaattataggcgacttatcacagcttccagctcagaaaaggtgtaaagatgatatgctggagcaaccttcgctatgtcaac |
4194596 |
T |
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| Q |
112 |
gttgttgggagtgacctaatgtgaaagtacggaggaaacaagttagaatttattctcagcaagggggcaaacaacttgaagtccatgcatatgaatttaa |
211 |
Q |
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| T |
4194597 |
gttgttgggagtgacctaatgtgaaagtacggaggaaacaagttagaatttattctcagcaagggggcaaacaacttgaagtccatgcatatgaatttaa |
4194696 |
T |
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| Q |
212 |
cttttaccttctctcccataacttgcttcagaattgataaagcaatagtctcagctttttcaagagttaagtcctgcacaacataataaat |
302 |
Q |
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| T |
4194697 |
cttttaccttctctcccattacttgcttcagaattgataaagcaatagtctcagctttttcaagagttaagtcctgcacaacataataaat |
4194787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 302 - 405
Target Start/End: Original strand, 4196457 - 4196560
Alignment:
| Q |
302 |
ttggtgcctctctataccctttatggtcttgatcttttcctccaagctctctaaattgtctaccaccttcttatgttctggccccttttttgtttgtttt |
401 |
Q |
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| T |
4196457 |
ttggtgcctctctataccctttatggtcttgatcttttcctccaagctctctaaattgtctaccaccttcttatgttctggccccttttttgtttgtttt |
4196556 |
T |
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| Q |
402 |
aact |
405 |
Q |
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|||| |
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| T |
4196557 |
aact |
4196560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 23 - 291
Target Start/End: Complemental strand, 50772725 - 50772454
Alignment:
| Q |
23 |
aaatagatggaaattataggcgacttatcacagcttccagctcagaaggggtgtaaa--tgatacgctggagcaaccttcgcaatgccaacgttgttggg |
120 |
Q |
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| T |
50772725 |
aaatagatggaaatcataggcgacttatcacagcttccacctcagacggggtataaagatgatacgctggagcaaccctggcaatgtcaacgttgttggg |
50772626 |
T |
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| Q |
121 |
agtgacctaatgtgaaagtacggaggaaacaagttagaatttattctcagca-agggggcaaacaacttgaagt-ccatgcatatgaatttaacttttac |
218 |
Q |
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| T |
50772625 |
agtgacctaatgtgaaagtacagaagaaacaagttagaatttattctcagtagggggggcaaacaactggaagtaagatgcatttggttttaac-tttac |
50772527 |
T |
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| Q |
219 |
cttctctcccataacttgcttcagaattgataaagcaatagtctcagctttttcaagagttaagtcctgcaca |
291 |
Q |
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| T |
50772526 |
cttctcttccataacttgcttcaggattgataaagcaatagtctcagcttcttgaagagttaagtcctgcaca |
50772454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 302 - 405
Target Start/End: Complemental strand, 3877 - 3774
Alignment:
| Q |
302 |
ttggtgcctctctataccctttatggtcttgatcttttcctccaagctctctaaattgtctaccaccttcttatgttctggccccttttttgtttgtttt |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3877 |
ttggtgcctctctataccctttatggtcttgatcttttcctccaagctctctaaattgtctaccaccttcttatgttctggccccttttttgtttgtttt |
3778 |
T |
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| Q |
402 |
aact |
405 |
Q |
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|||| |
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| T |
3777 |
aact |
3774 |
T |
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