View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1948_low_9 (Length: 372)
Name: NF1948_low_9
Description: NF1948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1948_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 20 - 347
Target Start/End: Original strand, 49085713 - 49086045
Alignment:
| Q |
20 |
acttgaacactaatttgactcaacaatggttaactgtagtgtaggtctagtgaaatcaaattgtttttaatagcatttttagtgctttctgtcggcttgt |
119 |
Q |
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| T |
49085713 |
acttgaacactaatttgactcaacaatggttaactgtagtgtaggtctagtgaaatcaaattgtttttaatagcatttttagtgctttctgtcggcttgt |
49085812 |
T |
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| Q |
120 |
ttgttaattatattgactcattgactgtctcctacaaatttaggattgtaattattatgtagtgattgatttgaa-tttttattgtacctcg----tgta |
214 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | || |
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| T |
49085813 |
ttgttaattacattgactcattgactgtctcctacaaatttaggattgtaattattatgtagtgattgatttgaattttttattgtacctcgtttattta |
49085912 |
T |
|
| Q |
215 |
aatcttacttgttagggctgtggtttaactagtatgcttatgtctaataacgatgaggccaagatcctgcttttagctggaagaattgcatttgcaggaa |
314 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49085913 |
aatcttacttgttagggctgtggtttaactagcatgcttatgtctaataacgatgaagccaagatcctgcttttagctggaagaattgcatttgcaggaa |
49086012 |
T |
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| Q |
315 |
tgatttcgtccgttcttacattatttctgtgcc |
347 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
49086013 |
tgatttcgtccgttcttacattatttctgtgcc |
49086045 |
T |
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