View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19490_high_10 (Length: 409)
Name: NF19490_high_10
Description: NF19490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19490_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 127 - 399
Target Start/End: Original strand, 40953647 - 40953919
Alignment:
| Q |
127 |
ttctataactctcttttttattgaaaaatgtttgtcgttagtaatagtatgttaggtacgtgttttgaaccatggacctcgttctcacatccactgtgat |
226 |
Q |
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| T |
40953647 |
ttctataactctcttttttattgaaaaatgtttgtagttagtaatagtatgttaggtacgtgttttgaaccatggacctcgttctcacatccactgtgat |
40953746 |
T |
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| Q |
227 |
gtaccataatcagtgattcatatttcaatataagnnnnnnnnnnnnnnnngtaagaacgttgtattaaaatttgaatcgtctgatatcgatccaacaaca |
326 |
Q |
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| T |
40953747 |
gtaccataatcagtgattcatatttcaatataagtttttatttttattttgtaaaaacgttgtattaaaatttgaatcgtctgatatcgatccaacaaca |
40953846 |
T |
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| Q |
327 |
atagatgttgtgaccgtatgaatgcagtaaatgttgatggcaataatccaatctccgtagactacgccttctt |
399 |
Q |
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| T |
40953847 |
atagatgttgtgaccgtatgaatgcagtaaatgttgatggcaacaatccaatctccgtagactacgccttctt |
40953919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 40953561 - 40953657
Alignment:
| Q |
18 |
ataaggaacataaattagacaaaatatagcattgttgaaattaattacacggtaaccccacacaatattcatattattatttgttcttctataactc |
114 |
Q |
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| T |
40953561 |
ataaggaacataaattagacaaaatatagcattgttgaaattaattacacagtaaccccacacaatattcatattattatttgttcttctataactc |
40953657 |
T |
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