View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19490_high_21 (Length: 270)

Name: NF19490_high_21
Description: NF19490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19490_high_21
NF19490_high_21
[»] chr5 (3 HSPs)
chr5 (18-260)||(39586588-39586830)
chr5 (17-238)||(39553480-39553701)
chr5 (17-235)||(39543461-39543679)


Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 39586588 - 39586830
Alignment:
Q  18 tcaacaagttcttctattaatctacaactatagggagttgaaagcacattcccaaaatacgaactcataaactcttctttgtttttgtcaccgttgctta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39586588 tcaacaagttcttctattaatctacaactatagggagttgaaagcacattcccaaaatacgaactcataaactcttctttgtttttgtcaccgttgctta 39586687  T
Q  118 atctctttcttccgtcaaccacaatccccatttttgcaacaacattttcactattggttgaagcggctgatgcaaccattttccacaggaaagcagaaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39586688 atctctttcttccgtcaaccacaatccccatttttgcaacaacattttcactattggttgaagcggctgatgcaaccattttccacaagaaagcagaaaa 39586787  T
Q  218 cgattcaagttttgagcgcttaacgcttccactattatctgtg 260  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  39586788 cgattcaagttttgagcgcttaacgcttccactattatttgtg 39586830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 39553480 - 39553701
Alignment:
Q  17 atcaacaagttcttctattaatctacaactatagggagttgaaagcacattcccaaaatacgaactcataaactcttctttgtttttgtcaccgttgctt 116  Q
    |||||| || ||||||  |||||||| || ||||||| | |||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||    
T  39553480 atcaaccagctcttctgctaatctaccaccatagggaatcgaaagcacattcccaaaatatgaattcataagctcttctttgtttttgtcaccgttgctt 39553579  T
Q  117 aatctctttcttccgtcaaccacaatccccatttttgcaacaacattttcactattggttgaagcggctgatgcaaccattttccacaggaaagcagaaa 216  Q
    |  |||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| ||||||| |||   |||||||||||||||| |||||||||||    
T  39553580 agcctctttcttccgtcaaccacaagccccatttttgcaacaatattttcattattgattgaagccgcttcggcaaccattttccacaagaaagcagaaa 39553679  T
Q  217 acgattcaagttttgagcgctt 238  Q
    | || || ||||||||||||||    
T  39553680 aggactcgagttttgagcgctt 39553701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 39543461 - 39543679
Alignment:
Q  17 atcaacaagttcttctattaatctacaactatagggagttgaaagcacattcccaaaatacgaactcataaactcttctttgtttttgtcaccgttgctt 116  Q
    |||||| || ||||||  |||||||| || ||||||| | |||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||    
T  39543461 atcaaccagctcttctgctaatctaccaccatagggaatcgaaagcacattcccaaaatatgaattcataagctcttctttgtttttgtcaccgttgctt 39543560  T
Q  117 aatctctttcttccgtcaaccacaatccccatttttgcaacaacattttcactattggttgaagcggctgatgcaaccattttccacaggaaagcagaaa 216  Q
    |  |||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| ||||||| |||   |||||||||||||||| |||||||||||    
T  39543561 agcctctttcttccgtcaaccacaagccccatttttgcaacaatattttcattattgattgaagccgcttcggcaaccattttccacaagaaagcagaaa 39543660  T
Q  217 acgattcaagttttgagcg 235  Q
    | || || |||||||||||    
T  39543661 aggactcgagttttgagcg 39543679  T

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