View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19490_high_25 (Length: 251)

Name: NF19490_high_25
Description: NF19490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19490_high_25
NF19490_high_25
[»] chr3 (22 HSPs)
chr3 (14-232)||(11779509-11779727)
chr3 (27-232)||(11771558-11771763)
chr3 (27-232)||(10129249-10129454)
chr3 (27-232)||(9841182-9841387)
chr3 (27-232)||(10034327-10034532)
chr3 (27-232)||(10431581-10431786)
chr3 (27-232)||(10361341-10361546)
chr3 (27-232)||(9852063-9852268)
chr3 (27-232)||(10263025-10263230)
chr3 (27-232)||(10519809-10520014)
chr3 (73-232)||(10582935-10583094)
chr3 (18-204)||(10665818-10666004)
chr3 (27-230)||(13853001-13853204)
chr3 (27-232)||(10091118-10091323)
chr3 (27-232)||(10198000-10198205)
chr3 (39-204)||(10502934-10503099)
chr3 (27-232)||(10373382-10373587)
chr3 (87-232)||(10530985-10531130)
chr3 (87-179)||(10679837-10679929)
chr3 (18-86)||(10085731-10085799)
chr3 (18-86)||(10192651-10192719)
chr3 (139-228)||(11244175-11244264)
[»] scaffold0083 (1 HSPs)
scaffold0083 (27-232)||(55142-55347)
[»] chr8 (2 HSPs)
chr8 (18-205)||(11487380-11487567)
chr8 (39-132)||(44955211-44955304)
[»] chr4 (1 HSPs)
chr4 (73-232)||(17850512-17850671)
[»] chr2 (1 HSPs)
chr2 (19-232)||(26909212-26909425)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 232
Target Start/End: Original strand, 11779509 - 11779727
Alignment:
Q  14 tgagatgaaggtgtttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatg 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11779509 tgaggtgaaggtgtttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatg 11779608  T
Q  114 taagtgcatcacaactactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11779609 taagtgcatcacaactactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaat 11779708  T
Q  214 atgaagtgattgcaatgaa 232  Q
    |||||||||||||||||||    
T  11779709 atgaagtgattgcaatgaa 11779727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 11771763 - 11771558
Alignment:
Q  27 tttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcaca 126  Q
    ||||||||| || ||||||||||||||| |||||| ||  || |  ||||| || |||| ||||||||||||||||||| ||||||||||||||||||||    
T  11771763 tttctaaaacattaatggaatccagactactacaaccatctatggtaagtgatttgagcgcagggaaaccatcaagtggaaaggatgtaagtgcatcaca 11771664  T
Q  127 actactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgc 226  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  11771663 actactccataaataaagactcacaagtgaagtgtaatagctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtatttgc 11771564  T
Q  227 aatgaa 232  Q
    ||||||    
T  11771563 aatgaa 11771558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 10129454 - 10129249
Alignment:
Q  27 tttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcaca 126  Q
    ||||| |||||||||||||||||||||||||||||| |  || |  ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  10129454 tttctgaaatataaatggaatccagactcctacaattatgtatggtaagtgtttggagcgcagggaaaccatcaagtggaaaggatgtaagtgcatcaca 10129355  T
Q  127 actactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgc 226  Q
    |||||||| ||||| || |||||||||||| |||||||||||||||||||||| |||||| |||||||| |||||||| | || ||||||||||||||||    
T  10129354 actactccgtaaatcaatactcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacatttttcaatatgaagtgattgc 10129255  T
Q  227 aatgaa 232  Q
    ||||||    
T  10129254 aatgaa 10129249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 9841387 - 9841182
Alignment:
Q  27 tttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcaca 126  Q
    ||||| |||||||||||||||| |||||||||||||||  || |  ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  9841387 tttctgaaatataaatggaatctagactcctacaatcaagtatggtaagtgtttggagcgcagggaaaccatcaagtgggaaggatgtaagtgtatcaca 9841288  T
Q  127 actactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgc 226  Q
     || | |||||| | ||||||||||||||| |||||||||||||||||||||| |||||| |||||||| |||||||||     ||||||||||||||||    
T  9841287 gctccaccataactgaagactcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacaactacgaatatgaagtgattgc 9841188  T
Q  227 aatgaa 232  Q
    ||||||    
T  9841187 aatgaa 9841182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 10034532 - 10034327
Alignment:
Q  27 tttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcaca 126  Q
    ||||| |||||||||||||| |||||||||||||||  | ||  | |||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  10034532 tttctgaaatataaatggaaaccagactcctacaattccatatctgaagtgtttggaggacagggaaaccatcaagtggaaaggatgtaagtgcatcaca 10034433  T
Q  127 actactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgc 226  Q
    ||||     ||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||| |||||||| | |  ||||||||||||||||    
T  10034432 actatgaattaaataaagactcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacattttacaatatgaagtgattgc 10034333  T
Q  227 aatgaa 232  Q
    ||||||    
T  10034332 aatgaa 10034327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 27 - 232
Target Start/End: Original strand, 10431581 - 10431786
Alignment:
Q  27 tttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcaca 126  Q
    ||||| |||||||||||||||||||||| || |||| |  || |||||||  ||||||  ||||||||||||| ||||| ||||||||||||| ||||||    
T  10431581 tttctgaaatataaatggaatccagacttctgcaattaaatatgtcaagtaattggagggcagggaaaccatcgagtggaaaggatgtaagtgaatcaca 10431680  T
Q  127 actactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgc 226  Q
    ||| ||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| |||||||| |||||||| | || ||| | ||||||||||    
T  10431681 actgctccataaataaagactgacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacatttttcaatttcaagtgattgc 10431780  T
Q  227 aatgaa 232  Q
    ||||||    
T  10431781 aatgaa 10431786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 27 - 232
Target Start/End: Original strand, 10361341 - 10361546
Alignment:
Q  27 tttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcaca 126  Q
    ||||| ||||||||||||||||||||||||||||||||| || |  ||||||| ||||| ||||||||||||| ||||| ||||||||||||| | ||||    
T  10361341 tttctgaaatataaatggaatccagactcctacaatcacgtatggtaagtgttcggagcgcagggaaaccatcgagtggaaaggatgtaagtgaaccaca 10361440  T
Q  127 actactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgc 226  Q
     |||     |||||  ||| |||||||||| |||||||||||||||||||||| |||||| |||||||| |||||||||| || ||||||||||||||||    
T  10361441 gctatgatctaaatgtagagtcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacaattttcaatatgaagtgattgc 10361540  T
Q  227 aatgaa 232  Q
    ||||||    
T  10361541 aatgaa 10361546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 9852268 - 9852063
Alignment:
Q  27 tttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcaca 126  Q
    |||||||||||||||||||||||||||| || ||||||   | |||||||||||||||||||||||||||||| ||||| |||||| |||||| ||||||    
T  9852268 tttctaaaatataaatggaatccagacttctccaatcatcaatgtcaagtgtttggagcacagggaaaccatcgagtggaaaggatttaagtgaatcaca 9852169  T
Q  127 actactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgc 226  Q
     ||||   | ||   ||||||||||||||| ||||| |||||||| ||||||| |||||| |||||||| |||||||||| || ||||| ||||||||||    
T  9852168 gctacgatagaaccgaagactcacaagtgatgtgtagttgctccatgtttcaggaggtaggaaggataaattctcacaattttcaatatcaagtgattgc 9852069  T
Q  227 aatgaa 232  Q
    ||||||    
T  9852068 aatgaa 9852063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 10263230 - 10263025
Alignment:
Q  27 tttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcaca 126  Q
    |||||||||||||||||||||||||||| ||||| | |  || |||||||||||||||  ||||||||||||| ||||| ||||||||||||| ||||||    
T  10263230 tttctaaaatataaatggaatccagacttctacacttatatatgtcaagtgtttggagggcagggaaaccatcgagtggaaaggatgtaagtgaatcaca 10263131  T
Q  127 actactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgc 226  Q
     ||||    ||| | ||||||||||||||| |||||||||||||||||||||| ||| || |||||||| |||||||||| |  ||| | ||||||||||    
T  10263130 gctacgatttaactcaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattctcacaatttacaatttcaagtgattgc 10263031  T
Q  227 aatgaa 232  Q
    ||||||    
T  10263030 aatgaa 10263025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 10520014 - 10519809
Alignment:
Q  27 tttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcaca 126  Q
    ||||| ||||||||||||||||||||||||| || |||| || |  ||||||||||||| ||||||||||||| ||||| ||||||||||||| ||||||    
T  10520014 tttctgaaatataaatggaatccagactcctgcactcacatatggtaagtgtttggagcgcagggaaaccatcgagtggaaaggatgtaagtgtatcaca 10519915  T
Q  127 actactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgc 226  Q
     ||||   | || | ||||||||||||||| ||||||||| |||||||||||| ||| || |||||||| |||||||||  || ||||| ||||||||||    
T  10519914 gctacgatagaacttaagactcacaagtgatgtgtaattgatccacgtttcaggaggaaggaaggataaattctcacaacattgaatattaagtgattgc 10519815  T
Q  227 aatgaa 232  Q
    ||||||    
T  10519814 aatgaa 10519809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 73 - 232
Target Start/End: Complemental strand, 10583094 - 10582935
Alignment:
Q  73 aagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcacaactactccataaataaagactcacaagtgaagtgtaattgctccac 172  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||||||| |||||| ||||   | || ||||||||||||||||| ||||| |||||||||    
T  10583094 aagtgttcggagcgcagggaaaccatcaagtggaaaggatgtaagtgaatcacagctacgatagaactaaagactcacaagtgatgtgtagttgctccac 10582995  T
Q  173 gtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgcaatgaa 232  Q
    ||||||| |||||| |||||||| |||||||||| ||  |||||||||||||||||||||    
T  10582994 gtttcaggaggtaggaaggataaattctcacaattttcgatatgaagtgattgcaatgaa 10582935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 10666004 - 10665818
Alignment:
Q  18 atgaaggtgtttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaag 117  Q
    |||||||  ||||||||||| |||||||| |||||||||||||||    ||    ||||||||||||| ||||||||||||||||||| |||||||||||    
T  10666004 atgaaggactttctaaaatacaaatggaaaccagactcctacaattctgtatccaaagtgtttggagcgcagggaaaccatcaagtggaaaggatgtaag 10665905  T
Q  118 tgcatcacaactactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcaca 204  Q
    ||||||||||||    |||||||  |||| ||||||||| |||||||||||||||||||||| |||||| |||||||| ||||||||    
T  10665904 tgcatcacaactttgacataaatctagacgcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcaca 10665818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 27 - 230
Target Start/End: Original strand, 13853001 - 13853204
Alignment:
Q  27 tttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcaca 126  Q
    |||||||||||| ||||||||||||| ||||||| |||||||    |||| |||||||  ||||||||||||||||| ||||||||||||||||||||||    
T  13853001 tttctaaaatattaatggaatccagattcctacactcacttatccgaagtctttggagtgcagggaaaccatcaagttggaaggatgtaagtgcatcaca 13853100  T
Q  127 actactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgc 226  Q
     ||||||| ||||  ||||||| |||| || |||||||||||||| ||||||| ||| || || ||||| |||||||| | ||  || | ||||||||||    
T  13853101 gctactccgtaaagtaagactcgcaagcgatgtgtaattgctccatgtttcaggaggaaggaatgataaattctcacatttttctatttcaagtgattgc 13853200  T
Q  227 aatg 230  Q
    ||||    
T  13853201 aatg 13853204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 10091323 - 10091118
Alignment:
Q  27 tttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcaca 126  Q
    ||||||||| || ||||||||||||||| |||||| ||  || |  ||||| || |||| ||||||||||||||||||| ||||||||||||||||||||    
T  10091323 tttctaaaacattaatggaatccagactactacaaccatctatggtaagtgatttgagcgcagggaaaccatcaagtggaaaggatgtaagtgcatcaca 10091224  T
Q  127 actactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgc 226  Q
     |||   | ||||||||| ||||||||||| |||||||||||||||||||||| |||||| |||||||| |||  ||||  || ||| | || |||||||    
T  10091223 gctatgacttaaataaagtctcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattcaaacaaaattcaatttcaattgattgc 10091124  T
Q  227 aatgaa 232  Q
    ||||||    
T  10091123 aatgaa 10091118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 10198205 - 10198000
Alignment:
Q  27 tttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcaca 126  Q
    ||||||||| || ||||||||||||||| |||||| ||  || |  ||||| || |||| ||||||||||||||||||| ||||||||||||||||||||    
T  10198205 tttctaaaacattaatggaatccagactactacaaccatctatggtaagtgatttgagcgcagggaaaccatcaagtggaaaggatgtaagtgcatcaca 10198106  T
Q  127 actactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgc 226  Q
     |||   | ||||||||| ||||||||||| |||||||||||||||||||||| |||||| |||||||| |||  ||||  || ||| | || |||||||    
T  10198105 gctatgacttaaataaagtctcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattcaaacaaaattcaatttcaattgattgc 10198006  T
Q  227 aatgaa 232  Q
    ||||||    
T  10198005 aatgaa 10198000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 39 - 204
Target Start/End: Complemental strand, 10503099 - 10502934
Alignment:
Q  39 aaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcacaactactccataa 138  Q
    |||||||||||| | ||||||| | ||| | || |||| |||||||  ||||||||||||||||||| |||||||| ||| ||||||| |||||||||||    
T  10503099 aaatggaatccaaattcctacagttactaatgttaagtctttggagtgcagggaaaccatcaagtggaaaggatgttagtccatcacagctactccataa 10503000  T
Q  139 ataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcaca 204  Q
    || ||||||||||||  | |||||||||||||||||||||| ||| ||||||||||| ||||||||    
T  10502999 atcaagactcacaagcaatgtgtaattgctccacgtttcagcaggaagaaaggataaattctcaca 10502934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 27 - 232
Target Start/End: Original strand, 10373382 - 10373587
Alignment:
Q  27 tttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcaca 126  Q
    ||||| ||||| |||||||||||||| |||||||||    ||    |||||||||||| |||||||||||||||||||| |||||| |||||| ||||||    
T  10373382 tttctgaaatacaaatggaatccagattcctacaattcagtatcataagtgtttggaggacagggaaaccatcaagtggaaaggatataagtgaatcaca 10373481  T
Q  127 actactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgc 226  Q
     ||||   |||||||||| | ||||||||| ||||||||||||||| |||||  ||| || |||||||| |||||||| | | |||| | ||||||||||    
T  10373482 gctacgatataaataaagccacacaagtgatgtgtaattgctccacatttcaagaggaaggaaggataaattctcacagtatctaatttcaagtgattgc 10373581  T
Q  227 aatgaa 232  Q
    ||||||    
T  10373582 aatgaa 10373587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 87 - 232
Target Start/End: Complemental strand, 10531130 - 10530985
Alignment:
Q  87 cagggaaaccatcaagtgggaaggatgtaagtgcatcacaactactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtag 186  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||  ||||||| |||| || |||||  ||||||||||||||| ||| |     
T  10531130 cagggaaaccatcaagttggaaggatgtaagtgcatcacagctactccataaaataagactctcaagcgatgtgtatctgctccacgtttcaggaggcat 10531031  T
Q  187 aaaggataagttctcacaatctttaatatgaagtgattgcaatgaa 232  Q
     || | ||| ||||||||||  | ||||  |||||| |||||||||    
T  10531030 gaatgctaacttctcacaattatcaatacaaagtgactgcaatgaa 10530985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 10679929 - 10679837
Alignment:
Q  87 cagggaaaccatcaagtgggaaggatgtaagtgcatcacaactactccataaataaagactcacaagtgaagtgtaattgctccacgtttcag 179  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||  |||||||||||| || || ||  |||||||||||||||    
T  10679929 cagggaaaccatcaagttggaaggatgtaagtgcatcacagctactccataaaataagactcacaagcgatgtatatctgctccacgtttcag 10679837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 10085799 - 10085731
Alignment:
Q  18 atgaaggtgtttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagca 86  Q
    |||||||  ||||||||||| |||||||||||| || ||||||||||| || |||||||||||||||||    
T  10085799 atgaaggactttctaaaataaaaatggaatccaaacacctacaatcacgtatgtcaagtgtttggagca 10085731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 10192719 - 10192651
Alignment:
Q  18 atgaaggtgtttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagca 86  Q
    |||||||  ||||||||||| |||||||||||| || ||||||||||| || |||||||||||||||||    
T  10192719 atgaaggactttctaaaataaaaatggaatccaaacacctacaatcacgtatgtcaagtgtttggagca 10192651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 228
Target Start/End: Original strand, 11244175 - 11244264
Alignment:
Q  139 ataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgcaa 228  Q
    |||||||  ||| ||||| |||||||||||||||||||||| |||||| || | |||| | |||||||    ||||||||||| ||||||    
T  11244175 ataaagagccaccagtgatgtgtaattgctccacgtttcaggaggtaggaatgttaagctgtcacaattgcgaatatgaagtgtttgcaa 11244264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 27 - 232
Target Start/End: Original strand, 55142 - 55347
Alignment:
Q  27 tttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcaca 126  Q
    ||||| ||||| |||||||| |||||||||||||   ||||| |||||||||||||||  ||||||||||||||||||| ||||||||||||| ||||||    
T  55142 tttctgaaatacaaatggaaaccagactcctacatctacttatgtcaagtgtttggagggcagggaaaccatcaagtggaaaggatgtaagtgaatcaca 55241  T
Q  127 actactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgc 226  Q
    ||||    ||| || |||||| |||||||| |||||||||||||||||||||| |||||| |||||||| |||||||| | || ||||||||||||||||    
T  55242 actatatgatatattaagactgacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacatttttcaatatgaagtgattgc 55341  T
Q  227 aatgaa 232  Q
    ||||||    
T  55342 aatgaa 55347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 11487567 - 11487380
Alignment:
Q  18 atgaaggtgtttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaag 117  Q
    |||||||  ||||||||||| ||||||||||||||| ||||||||||  ||  |  ||| |||||||| ||||||||||||||||||| |||||||||||    
T  11487567 atgaaggactttctaaaataaaaatggaatccagacacctacaatcatatagttttagtctttggagcgcagggaaaccatcaagtggaaaggatgtaag 11487468  T
Q  118 tgcatcacaactactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaa 205  Q
    ||||||||| |||||  |||| | |||   |||||| ||  ||||||||||||||||||||| ||| || || ||||| |||||||||    
T  11487467 tgcatcacagctactaaataactcaagcgacacaagagacttgtaattgctccacgtttcaggaggaaggaatgataaattctcacaa 11487380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 132
Target Start/End: Original strand, 44955211 - 44955304
Alignment:
Q  39 aaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcacaactact 132  Q
    |||| |||||||||||||||||| |||| | || |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||    
T  44955211 aaattgaatccagactcctacaaccactaatgttaagtctttggagcacagggaaaccatcaagtgggaatgatttaagtgcatcacagctact 44955304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 232
Target Start/End: Original strand, 17850512 - 17850671
Alignment:
Q  73 aagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcacaactactccataaataaagactcacaagtgaagtgtaattgctccac 172  Q
    |||| ||| |||| |||| |||||||| | || ||| || ||||||||||| || || |||||||| | ||||||| ||||||| ||||||||| |||||    
T  17850512 aagtctttcgagcgcaggaaaaccatccaatgagaaagaggtaagtgcatcgcagctgctccataactcaagactcgcaagtgatgtgtaattgttccac 17850611  T
Q  173 gtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgcaatgaa 232  Q
    ||||||| ||| |  |||||||| |||| |||     ||||||||||||| |||||||||    
T  17850612 gtttcaggaggcatgaaggataaattcttacacatactaatatgaagtgactgcaatgaa 17850671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 26909425 - 26909212
Alignment:
Q  19 tgaaggtgtttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagt 118  Q
    |||||| |||||| |||||||||||||||||| ||||||||||||    |  | |||  |||||||  |||||||||||||||| || || |||  ||||    
T  26909425 tgaaggagtttctgaaatataaatggaatccacactcctacaatcgtaaattttaagactttggagagcagggaaaccatcaagcggaaatgattcaagt 26909326  T
Q  119 gcatcacaactactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaa 218  Q
    |||||||| |||    |||| | ||   |||||||||| |||||||||||||| ||||||  |||||| |||||||| |||  ||||  || ||| | ||    
T  26909325 gcatcacagctatgatataactcaatgttcacaagtgatgtgtaattgctccaggtttcaagaggtaggaaggataaattcaaacaaaattcaatttcaa 26909226  T
Q  219 gtgattgcaatgaa 232  Q
     |||||||||||||    
T  26909225 ttgattgcaatgaa 26909212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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