View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19490_high_27 (Length: 236)
Name: NF19490_high_27
Description: NF19490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19490_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 40063533 - 40063306
Alignment:
| Q |
1 |
aatacccacataacaattcatatcgtccttcaccattctcattaatagt-aatagtatttctcatttacgcttcagtagtgttggtcacatccattgatt |
99 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063533 |
aatacccacataacaattcatatcatccttcaccattctcattaatagttaatagtatttctcatttacgcttcagtagtgttggtcacatccattgatt |
40063434 |
T |
|
| Q |
100 |
cattgcgtgcgtcagtgtatatatatgtaagtaaaacctagctaccgtcacgtcatgttcatttatttttaatccataaataaacagagtactctgtttt |
199 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40063433 |
cattgcgtgcgtcagtgtatatatatgtaagtaaaacctagctaccgtcacgtcatgttcatttatttttaatccataaataaacagagtactctgtttt |
40063334 |
T |
|
| Q |
200 |
cttttcttttctccatcatcatcatcaa |
227 |
Q |
| |
|
||||||| |||||||||||||||||||| |
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|
| T |
40063333 |
cttttctattctccatcatcatcatcaa |
40063306 |
T |
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