View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19490_high_28 (Length: 222)
Name: NF19490_high_28
Description: NF19490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19490_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 1748677 - 1748475
Alignment:
| Q |
1 |
cgacttcataagaaatgaaagagcatcagatcttgctggtgtatcttcaacaaatgctcttacttttataggtaaaaaccaaatcctaccaattttattg |
100 |
Q |
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| T |
1748677 |
cgacttcataagaaatgaaagagcatcagatcttgctggtgtatcttcaacaaatgctcttacttttataggtaaaaaccaaatcctaccaattttattg |
1748578 |
T |
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| Q |
101 |
gtatatatatgtgtgcggagatagggatgaaatgtgatttaatacatatatgaaatatggcaaatgctaactaactcatgcatagtatatattggggata |
200 |
Q |
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| T |
1748577 |
gtatatatatgtgtgtggagatagggatgaaatgtgatttaatacatatatgaaatatggcaaatgctaactaactcatgcatagtatatattggggata |
1748478 |
T |
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| Q |
201 |
act |
203 |
Q |
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||| |
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| T |
1748477 |
act |
1748475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 1717324 - 1717239
Alignment:
| Q |
2 |
gacttcataagaaatgaaagagcatcagatcttgctggtgtatcttcaacaaatgctcttacttttataggtaaaaaccaaatcct |
87 |
Q |
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|||| |||||||||||| ||||| | |||||| |||||| |||||| |||||||||||| |||| |||||||| |||||||||| |
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| T |
1717324 |
gactacataagaaatgatagagcctgggatcttagtggtgtctcttcatcaaatgctcttagttttgtaggtaaataccaaatcct |
1717239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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