View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19490_high_30 (Length: 201)
Name: NF19490_high_30
Description: NF19490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19490_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 5942170 - 5942340
Alignment:
| Q |
15 |
tttttccaaaaatctcaatatttgatatgggtttagtatttggaagatttagtgctgagacaccaaaatatgaaatactcaaaaccacacaaaactatgt |
114 |
Q |
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| T |
5942170 |
tttttccaaaaatctcaacatttgatatgggtttagtatttggaagatttagtgctgagacaccaaaatatgaaatactcaaaaccacacaaaactatgt |
5942269 |
T |
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| Q |
115 |
aatccgaaaatatgcaccttctctagtagctgaaatcacctatgatccatcaacattcaaaggagacaaag |
185 |
Q |
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| T |
5942270 |
aatccgaaaatatgcaccttctctagtagctgaaatcacctatgatccatcaacattcaaaggagacaaag |
5942340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 50 - 166
Target Start/End: Original strand, 5951003 - 5951119
Alignment:
| Q |
50 |
gtatttggaagatttagtgctgagacaccaaaatatgaaatactcaaaaccacacaaaactatgtaatccgaaaatatgcaccttctctagtagctgaaa |
149 |
Q |
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| T |
5951003 |
gtatttggaaaaattggtgttgagacaccaaaatatgaagtgacaaaaaccacacaagactatgaaatcagaatatatgcaccttctgtagcagctgaag |
5951102 |
T |
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| Q |
150 |
tcacctatgatccatca |
166 |
Q |
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| T |
5951103 |
tcacatatgatccatca |
5951119 |
T |
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