View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19490_high_4 (Length: 495)
Name: NF19490_high_4
Description: NF19490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19490_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 189 - 483
Target Start/End: Original strand, 27956598 - 27956907
Alignment:
| Q |
189 |
cattttgttttggcaacgtaaaacaaacttatgttacagcttagaacttgatcgcaaacatttatttgaagatacaatactcatagcattggtttaaagc |
288 |
Q |
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| T |
27956598 |
cattttgttttggcaacgtaaaacaaatttatgttacagcttagaacttgatcgcaaacatttatttgaagatacaatactcatagcattagtttaaagc |
27956697 |
T |
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| Q |
289 |
agtcttcatgattttatgtattttgaaagacactc-----------------cttgtacttattttcgaacttaagtatatctaagcacnnnnnnngtta |
371 |
Q |
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| T |
27956698 |
agtcttcatgattttatgtattttgagagacgctcctttgtgtaccatatgtcttgtacttattttcgaacttaagtatatctaagcactttttttgtta |
27956797 |
T |
|
| Q |
372 |
ccaagttagaagtacgacgtttctaccaccgtttaacaatgacttttctaatcctccaacttcacgccaccaaatctaaaaccgcaaatccaccaccctt |
471 |
Q |
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| T |
27956798 |
ccaagttagaagtacgatgtttctaccaccgcttaacaatgacttttctaatcttccaacttcacgccaccaaatctgaaaccgc--atccaccaccctt |
27956895 |
T |
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| Q |
472 |
aaccactacctt |
483 |
Q |
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|||||||||||| |
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| T |
27956896 |
aaccactacctt |
27956907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 27956524 - 27956597
Alignment:
| Q |
30 |
ttcttatatcaataatactattaagtgtgaaagatttcttcaaattcatgaaaagtgttttagagtagtcacga |
103 |
Q |
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| T |
27956524 |
ttcttatgtcaataatactattaagtgtgaaagatttcttcaaattcatgaaaagtgttttagagtagtcacga |
27956597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 2488192 - 2488135
Alignment:
| Q |
127 |
taattaataatattgcatagaattgtagttaaatgtaactgatgcagtgtcaatcgca |
184 |
Q |
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| T |
2488192 |
taattattaatattgcgtagaattgcagtcaaatgcgactgatgcagtctcaatcgca |
2488135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 272 - 483
Target Start/End: Complemental strand, 16332172 - 16331960
Alignment:
| Q |
272 |
tagcattggtttaaagcagtcttcatgattttatgtattttgaaagacactcctt---gtac-ttattttcgaacttaagtatatctaagcacnnnnnnn |
367 |
Q |
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||||||| ||||| || | ||||||||||||||||| |||||||||||||||||| |||| |||||||| || ||||||||| |||||||| |
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| T |
16332172 |
tagcattagtttagagtactcttcatgattttatgtcttttgaaagacactcctttgtgtaccttattttcaaatttaagtatacctaagcactttttt- |
16332074 |
T |
|
| Q |
368 |
gttaccaagttagaagtacgacgtttctaccaccgtttaacaatgacttttctaatcctccaacttcacgccaccaaatctaaaaccgcaaatccaccac |
467 |
Q |
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||||| | |||| |||||| | |||| || ||| ||||||||||||||||||| ||| |||||||||| |||||| ||| ||||| |||||||||||||| |
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| T |
16332073 |
gttacgatgttataagtacaaagtttttatcactgtttaacaatgacttttcttatcttccaacttcaggccacc-aatttaaaa-cgcaaatccaccac |
16331976 |
T |
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| Q |
468 |
ccttaaccactacctt |
483 |
Q |
| |
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|||||||||||||||| |
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| T |
16331975 |
ccttaaccactacctt |
16331960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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