View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19490_low_1 (Length: 609)
Name: NF19490_low_1
Description: NF19490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19490_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 17 - 604
Target Start/End: Complemental strand, 37345668 - 37345084
Alignment:
| Q |
17 |
ctccaaagggtcatcttctgatatttgtttggttcttgatttcttcaaagagagtttcttagagaggtttggtgaacttctaacatgatttttatgtgaa |
116 |
Q |
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| T |
37345668 |
ctccaaagggtcatcttctgatatttgtttggttcttgatttcttcaaagagagtttcttagagaggtttggtgaatttctaacatgatttttatgtgaa |
37345569 |
T |
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| Q |
117 |
aatttccatgcagcacaagaagcagcatctgagaccaaagaggaaccacctaaacttgaagaacagtaacttggttcaatgcctttagagaaatcttcaa |
216 |
Q |
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| T |
37345568 |
aatttccatgcagcacaagaagcagcatctgagaccaaagaggaaccacctaaacttgaagaacagtaacttggttcaatgtctttagagaaatcttcaa |
37345469 |
T |
|
| Q |
217 |
agcaagaggtccaaccactttcctcggattggtaatttgtgtttccattggtacgggcagatactgttttttccatagaacaattctgagaatgctcttt |
316 |
Q |
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| T |
37345468 |
agtaagaagtccaaccactttcctcggattggtaatttgtgtttccattggtacgggcagatactgttttttccatagaacaattctgagaatgctcttt |
37345369 |
T |
|
| Q |
317 |
tagtcttatactcttatgacataagaagagaaagcagcataacaggaatgttttgtcagaggttgggaaaatatataaacccaaaaatcattgtcttact |
416 |
Q |
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| T |
37345368 |
tagtcttatactcttatgacataagaagagaaagcagcataacaggaatgttttgtcagaggttgggaaaatatataaacccaaaaatcattgtcttact |
37345269 |
T |
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| Q |
417 |
atttaataaaagggaaatgtttcatgtacacaaaatccgacatcaacacggtatgtatatacggtttttgacttgnnnnnnnctttcttactgattctaa |
516 |
Q |
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| T |
37345268 |
atttaataaaagggaagtgtttcatgtacacaaaatccgacatcaacacggtatgtatatacggtttttgacttg-ttttttctttcttacttattccaa |
37345170 |
T |
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| Q |
517 |
cacaacacacatctgaattgtattttatagaatgtcgaacttttgtgtgtttaaataacacatctcttaataaaaacacaagaattat |
604 |
Q |
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| T |
37345169 |
caca--acacatctcaattgtattttatagaatgtcaaacttttgtgtgtttaaataacacatcttttaataaaaacacaagaattat |
37345084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 238
Target Start/End: Original strand, 16735512 - 16735630
Alignment:
| Q |
114 |
gaaaatttccatgcagcacaagaagcagcatctgagaccaaagaggaaccacctaaacttgaagaacagtaacttggttcaatgcctttagagaaatctt |
213 |
Q |
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| T |
16735512 |
gaaaatttccatgcagcacaagaagcagcatctgaaagcaaagaagaaccacc---ac---cagaacaataacttggttctataccttttgagaaatcat |
16735605 |
T |
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| Q |
214 |
caaagcaagaggtccaaccactttc |
238 |
Q |
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| T |
16735606 |
caaagtaagttgtccatccactttc |
16735630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 446 - 478
Target Start/End: Original strand, 42462551 - 42462583
Alignment:
| Q |
446 |
acaaaatccgacatcaacacggtatgtatatac |
478 |
Q |
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| T |
42462551 |
acaaaatccgacattaacacggtatgtatatac |
42462583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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