View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19490_low_12 (Length: 399)
Name: NF19490_low_12
Description: NF19490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19490_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 15 - 384
Target Start/End: Complemental strand, 51116053 - 51115684
Alignment:
| Q |
15 |
aaggtcatggagaaggttcaccctcaacaatcgatatcgttgtcttccactggtgaagttgctgaaaacagtctccgaaatgatgtgtacactgcagctg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
51116053 |
aaggtcatggagaaggttcaccctcaacaatcgatatcgttgtcttccaccggtgaagttgctgaagacagtctccgaaatgatgtgtacactgcggctg |
51115954 |
T |
|
| Q |
115 |
cttatggagatttggagaagctgcgtagattggtggagcaagagggttgccttgttaccgagcctgatggtttgggttactacgtgattcagtgggctgc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
51115953 |
cttatggagatttggagaagctgcgtagattggtggagcaagagggttgcctcgttaccgagcctgatggtttgggttattacgtgattcagtgggctgc |
51115854 |
T |
|
| Q |
215 |
actcaacaaccatactgctgttgctcagtacatcatcgatcatggtggagatataaatgcaacagatcgtaatggccaaacggcattgcattggagtgcg |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51115853 |
actcaacaaccatactgctgttgctcagtacatcatcgatcatggtggagatataaacgcaacagatcgtaatggccaaacggcattgcattggagtgcg |
51115754 |
T |
|
| Q |
315 |
gttcgaggttgtattgaggttgcagagcttttactcaaagagggtgctgaattgaattctgctgacaagt |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51115753 |
gttcgaggttgtattgaggttgcagagcttttactcaaagagggtgctgaattgaattctgctgacaagt |
51115684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 64 - 383
Target Start/End: Complemental strand, 51106668 - 51106349
Alignment:
| Q |
64 |
ctggtgaagttgctgaaaacagtctccgaaatgatgtgtacactgcagctgcttatggagatttggagaagctgcgtagattggtggagcaagagggttg |
163 |
Q |
| |
|
|||||| ||| |||||| |||| |||| || ||||| |||| ||| ||||||||| ||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
51106668 |
ctggtggagtcgctgaagacagactccagaaggatgtttacattgcgactgcttatgaggatttagagaagctacgtagattggtggagcaagagggttg |
51106569 |
T |
|
| Q |
164 |
ccttgttaccgagcctgatggtttgggttactacgtgattcagtgggctgcactcaacaaccatactgctgttgctcagtacatcatcgatcatggtgga |
263 |
Q |
| |
|
||| |||||||||||||||| | ||||||||||| | ||||||||||||||||||||||||| ||| |||||||| |||||||||| |||||||||||| |
|
|
| T |
51106568 |
cctcgttaccgagcctgatgctacgggttactacgcgcttcagtgggctgcactcaacaaccaaacttctgttgctaagtacatcattgatcatggtgga |
51106469 |
T |
|
| Q |
264 |
gatataaatgcaacagatcgtaatggccaaacggcattgcattggagtgcggttcgaggttgtattgaggttgcagagcttttactcaaagagggtgctg |
363 |
Q |
| |
|
||||||||||||| |||||||| |||| | || ||||||||||||||||| || || |||| | ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
51106468 |
gatataaatgcaaaagatcgtagtggctagacagcattgcattggagtgccgtacggggttctgttgaggttgcagaccttttactcaaagagggtgctc |
51106369 |
T |
|
| Q |
364 |
aattgaattctgctgacaag |
383 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
51106368 |
aattgaattctgctgacaag |
51106349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 99 - 247
Target Start/End: Original strand, 48032818 - 48032966
Alignment:
| Q |
99 |
gtgtacactgcagctgcttatggagatttggagaagctgcgtagattggtggagcaagagggttgccttgttaccgagcctgatggtttgggttactacg |
198 |
Q |
| |
|
||||||||||| || |||||||| |||||||||||||| | ||||||||||||| || ||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
48032818 |
gtgtacactgccgcggcttatggggatttggagaagctacatagattggtggagattgaaggttgtcttgttaacgagcctgatggtttgggttactacg |
48032917 |
T |
|
| Q |
199 |
tgattcagtgggctgcactcaacaaccatactgctgttgctcagtacat |
247 |
Q |
| |
|
||||||||||||| || || |||| ||||||| |||||||||||| |
|
|
| T |
48032918 |
ctcttcagtgggctgctcttaataaccgcactgctgctgctcagtacat |
48032966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 255 - 362
Target Start/End: Original strand, 48033760 - 48033867
Alignment:
| Q |
255 |
catggtggagatataaatgcaacagatcgtaatggccaaacggcattgcattggagtgcggttcgaggttgtattgaggttgcagagcttttactcaaag |
354 |
Q |
| |
|
|||||||||||| ||||||||||||||| | |||||| || ||||||||||||||||||||||| ||| |||| ||||||||||||| |||||| ||| |
|
|
| T |
48033760 |
catggtggagatgtaaatgcaacagatcattctggccagacagcattgcattggagtgcggttcggggtgctattcaggttgcagagctattactccaag |
48033859 |
T |
|
| Q |
355 |
agggtgct |
362 |
Q |
| |
|
|||||||| |
|
|
| T |
48033860 |
agggtgct |
48033867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University