View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19490_low_13 (Length: 383)
Name: NF19490_low_13
Description: NF19490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19490_low_13 |
 | |
|
| [»] scaffold0286 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 2 - 377
Target Start/End: Original strand, 2188014 - 2188389
Alignment:
| Q |
2 |
tagtctatcaacggataacaggcgtcccaacagtgattttctttcattaacagcccatctgagaacctataccgatggtattgagtttgacatcaacagt |
101 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2188014 |
tagtctatcaacggataacaggcatcccaacagtgattttctttcattaacagcccatctgagaacctataccgatggtattgagtttgacatcaacagt |
2188113 |
T |
|
| Q |
102 |
gtcgatctcaatctcgtgatacaaccagatcatacatatctatatgatctgcgacagcaaatgactgaactcgaatctggcctggacaaaacatatttaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| |||||| |||||| |
|
|
| T |
2188114 |
gtcgatctcaatctcgtgatacaaccagatcatacatatctatatgatctgcgacagcaagtgatggaactcgaatctgacctggagaaaacagatttaa |
2188213 |
T |
|
| Q |
202 |
tagatgaatggatccatgcagagattacgtttaagtgtgagggcggcagagaggaagaattgtttatagaaagtggagttcacgtattcaagctgaaaac |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2188214 |
tagatgaatggatccatgcagagattacgtttaagtgtgagggcggcagagaggaagaattgtttatagaaagtggagttcacgtattcaagctgaaaac |
2188313 |
T |
|
| Q |
302 |
tagtatggaggatattcgatttaccaatccgcataattgagaaagtttcaaacccaacaaagtagaaatatattct |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2188314 |
tagtatggaggatattcgatttaccaatccgcataattgagaaagtttcaaacccaacaaagtagaaatattttct |
2188389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 8 - 345
Target Start/End: Complemental strand, 2170606 - 2170263
Alignment:
| Q |
8 |
atcaacggataacaggcgtcccaacagtgattttctttcattaacagcccatctgagaacctataccgat------ggtattgagtttgacatcaacagt |
101 |
Q |
| |
|
||||| |||||||| || || |||||||||||||| ||||||||||||| ||||||||||| ||| | || | |||||||||||||||| ||||| |
|
|
| T |
2170606 |
atcaatggataacaagcatctcaacagtgattttccttcattaacagcctatctgagaaccaatatctataaatatgatattgagtttgacatcgacagt |
2170507 |
T |
|
| Q |
102 |
gtcgatctcaatctcgtgatacaaccagatcatacatatctatatgatctgcgacagcaaatgactgaactcgaatctggcctggacaaaacatatttaa |
201 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||| || |||||||||||| || | | || || ||||| |
|
|
| T |
2170506 |
atcaatctcaatctcgtgatacaaccagatcatacatatctatatgatctacgactgcaagagatgaaactcgaatctgtactaggcgaagcacttttaa |
2170407 |
T |
|
| Q |
202 |
tagatgaatggatccatgcagagattacgtttaagtgtgagggcggcagagaggaagaattgtttatagaaagtggagttcacgtattcaagctgaaaac |
301 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2170406 |
tagctgaatggatccatgcagagattacgtttaagtgtgagggttgcatagaggaagcattggttatagaaagtggaattcacgtattcaagctgaaaag |
2170307 |
T |
|
| Q |
302 |
tagtatggaggatattcgatttaccaatccgcataattgagaaa |
345 |
Q |
| |
|
||||||||||||||||||||| ||||||||| || | ||||||| |
|
|
| T |
2170306 |
tagtatggaggatattcgattcaccaatccgtatgaatgagaaa |
2170263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 161; Significance: 9e-86; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 8 - 345
Target Start/End: Original strand, 12655 - 12998
Alignment:
| Q |
8 |
atcaacggataacaggcgtcccaacagtgattttctttcattaacagcccatctgagaacctataccgat------ggtattgagtttgacatcaacagt |
101 |
Q |
| |
|
||||| |||||||| || || |||||||||||||| ||||||||||||| ||||||||||| ||| | || | |||||||||||||||| ||||| |
|
|
| T |
12655 |
atcaatggataacaagcatctcaacagtgattttccttcattaacagcctatctgagaaccaatatctataaatatgatattgagtttgacatcgacagt |
12754 |
T |
|
| Q |
102 |
gtcgatctcaatctcgtgatacaaccagatcatacatatctatatgatctgcgacagcaaatgactgaactcgaatctggcctggacaaaacatatttaa |
201 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||| || |||||||||||| || | | || || ||||| |
|
|
| T |
12755 |
atcaatctcaatctcgtgatacaaccagatcatacatatctatatgatctacgactgcaagagatgaaactcgaatctgtactaggcgaagcacttttaa |
12854 |
T |
|
| Q |
202 |
tagatgaatggatccatgcagagattacgtttaagtgtgagggcggcagagaggaagaattgtttatagaaagtggagttcacgtattcaagctgaaaac |
301 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12855 |
tagctgaatggatccatgcagagattacgtttaagtgtgagggttgcatagaggaagcattggttatagaaagtggaattcacgtattcaagctgaaaag |
12954 |
T |
|
| Q |
302 |
tagtatggaggatattcgatttaccaatccgcataattgagaaa |
345 |
Q |
| |
|
||||||||||||||||||||| ||||||||| || | ||||||| |
|
|
| T |
12955 |
tagtatggaggatattcgattcaccaatccgtatgaatgagaaa |
12998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 16694585 - 16694636
Alignment:
| Q |
265 |
ttatagaaagtggagttcacgtattcaagctgaaaactagtatggaggatat |
316 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| ||||| ||| ||||||||||| |
|
|
| T |
16694585 |
ttatagaaagtggaattcacttattcaagcagaaaagtagcatggaggatat |
16694636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University