View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19490_low_2 (Length: 515)

Name: NF19490_low_2
Description: NF19490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19490_low_2
NF19490_low_2
[»] chr4 (2 HSPs)
chr4 (184-504)||(5051672-5051989)
chr4 (18-72)||(5052031-5052085)
[»] chr8 (2 HSPs)
chr8 (300-356)||(38432772-38432828)
chr8 (184-275)||(38432650-38432742)
[»] chr2 (2 HSPs)
chr2 (306-363)||(42795950-42796007)
chr2 (303-363)||(19906318-19906379)
[»] chr6 (1 HSPs)
chr6 (303-363)||(8645180-8645241)
[»] chr5 (3 HSPs)
chr5 (303-358)||(39263673-39263728)
chr5 (306-363)||(4425410-4425467)
chr5 (303-363)||(4432851-4432911)
[»] chr3 (1 HSPs)
chr3 (304-363)||(14417795-14417854)
[»] chr7 (2 HSPs)
chr7 (303-356)||(13471398-13471451)
chr7 (314-360)||(13471185-13471231)


Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 184 - 504
Target Start/End: Complemental strand, 5051989 - 5051672
Alignment:
Q  184 tgatggtattgaatataagaaaatgtcaacagttcaatcttatgcaatcatattattcctaaattacctttcaatgaatgtgattttatttttcaatgaa 283  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||||||||    
T  5051989 tgatggtattgaatataagaaaatgtcaacaattcaatcttatgcaatcatattattcctaaatttcccttcaatgaatgtgtttttgtttttcaatgaa 5051890  T
Q  284 gttttttcttctcatggaggggtaatttagaaattacagttgtattctttataactttgagaaaaataaatgacaccaacgagnnnnnnnnnnaaaagat 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          |||||||    
T  5051889 gttttttcttctcatggaggggtaatttagaaattacagttgtattctttataactttgagaaaaataaatgacaccaactag-tttttttttaaaagat 5051791  T
Q  384 ttgaatttttatttgcttatatatactactattaaaaattacaaaataaatgatatattttctctggtctcgtttataaataaaaattcgctttctagat 483  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| | |||||||||||||| |||||||||||| | |||||||||    
T  5051790 ttgaatttttatttgcttatatatactactattaaaaatta-taaataaatgatatatatcctctggtctcgtttgtaaataaaaatttg-tttctagat 5051693  T
Q  484 ttatttaataattggtatttt 504  Q
    |||||||||||||||||||||    
T  5051692 ttatttaataattggtatttt 5051672  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 5052085 - 5052031
Alignment:
Q  18 attaatgtcactaaaaactaatgtcatcaattgtcatccaaagataatgatatat 72  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5052085 attaatgtcaccaaaaactaatgtcatcaattgtcatccaaagataatgatatat 5052031  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 300 - 356
Target Start/End: Original strand, 38432772 - 38432828
Alignment:
Q  300 gaggggtaatttagaaattacagttgtattctttataactttgagaaaaataaatga 356  Q
    |||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||    
T  38432772 gaggggtaatttagaaattacaattgtattctttataactttgagggaaataaatga 38432828  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 275
Target Start/End: Original strand, 38432650 - 38432742
Alignment:
Q  184 tgatggtattgaatataagaaaatgtcaac-agttcaatcttatgcaatcatattattcctaaattacctttcaatgaatgtgattttatttt 275  Q
    ||||||| ||||||||| | |||||||||| | ||| ||||||| ||||  || ||||| ||||||||| |||||| ||||||||||||||||    
T  38432650 tgatggtcttgaatatacgcaaatgtcaactacttctatcttattcaatgctactattcttaaattacccttcaattaatgtgattttatttt 38432742  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 42795950 - 42796007
Alignment:
Q  306 taatttagaaattacagttgtattctttataactttgagaaaaataaatgacaccaac 363  Q
    |||||||||||||||| ||||||| ||||||| ||||||| |||||||||||||||||    
T  42795950 taatttagaaattacaattgtattttttataattttgagagaaataaatgacaccaac 42796007  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 303 - 363
Target Start/End: Complemental strand, 19906379 - 19906318
Alignment:
Q  303 gggtaatttagaaattacagttgtattcttt-ataactttgagaaaaataaatgacaccaac 363  Q
    |||||||||||||||| || ||||||| ||| |||||||||||| |||||||| ||||||||    
T  19906379 gggtaatttagaaattgcaattgtatttttttataactttgagagaaataaataacaccaac 19906318  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 363
Target Start/End: Original strand, 8645180 - 8645241
Alignment:
Q  303 gggtaatttagaaattacagttgtattcttt-ataactttgagaaaaataaatgacaccaac 363  Q
    ||||||||||||||||||| ||||||| ||| |||||||||||  |||||||||||||||||    
T  8645180 gggtaatttagaaattacaattgtatttttttataactttgagtgaaataaatgacaccaac 8645241  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 358
Target Start/End: Complemental strand, 39263728 - 39263673
Alignment:
Q  303 gggtaatttagaaattacagttgtattctttataactttgagaaaaataaatgaca 358  Q
    ||||||||| ||||||||| ||| ||||||||||| ||||||| ||||||||||||    
T  39263728 gggtaattttgaaattacaattgcattctttataattttgagagaaataaatgaca 39263673  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 4425410 - 4425467
Alignment:
Q  306 taatttagaaattacagttgtattctttataactttgagaaaaataaatgacaccaac 363  Q
    ||||||||||||| ||||| |||| ||||| ||||||||| ||||||| |||||||||    
T  4425410 taatttagaaattgcagttatattttttatgactttgagagaaataaacgacaccaac 4425467  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 363
Target Start/End: Original strand, 4432851 - 4432911
Alignment:
Q  303 gggtaatttagaaattacagttgtattctttataactttgagaaaaataaatgacaccaac 363  Q
    ||||||||||||||||  | ||||| | ||||||||||| ||| |||||||||||| ||||    
T  4432851 gggtaatttagaaattgtaattgtaatttttataactttaagagaaataaatgacatcaac 4432911  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 304 - 363
Target Start/End: Complemental strand, 14417854 - 14417795
Alignment:
Q  304 ggtaatttagaaattacagttgtattctttataactttgagaaaaataaatgacaccaac 363  Q
    ||||||||| || ||||| ||||||| ||||||||||||| ||||||||| |||||||||    
T  14417854 ggtaatttaaaagttacaattgtattttttataactttgaaaaaaataaacgacaccaac 14417795  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 13471398 - 13471451
Alignment:
Q  303 gggtaatttagaaattacagttgtattctttataactttgagaaaaataaatga 356  Q
    ||||||||||||||||||| ||||| | ||||||||||| ||| ||||||||||    
T  13471398 gggtaatttagaaattacaattgtactttttataactttaagagaaataaatga 13471451  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 360
Target Start/End: Original strand, 13471185 - 13471231
Alignment:
Q  314 aaattacagttgtattctttataactttgagaaaaataaatgacacc 360  Q
    |||||||| ||||||| ||||||| ||||||| ||||||||||||||    
T  13471185 aaattacaattgtattttttataattttgagagaaataaatgacacc 13471231  T

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