View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19490_low_20 (Length: 282)
Name: NF19490_low_20
Description: NF19490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19490_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 5302190 - 5302335
Alignment:
| Q |
1 |
atattataagtcttggtgagaaaaggaggcaccttatcggaactactaccctgagcttcttccatcattcccaaaataaccctcaaactcaaaattacaa |
100 |
Q |
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| T |
5302190 |
atattataagtcttagtgagaaaaggaggcaccttatcggaactactaccctgagcttcttccatcattcccaaaataactctcaaacccaaaattacaa |
5302289 |
T |
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| Q |
101 |
ttttcaatacacaatgacttctcaagactcaaacaccctttatata |
146 |
Q |
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| T |
5302290 |
ttttcaatacacaatgactcctcaagactcaaacaccctttatata |
5302335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 146
Target Start/End: Original strand, 19100556 - 19100656
Alignment:
| Q |
45 |
actaccctgagcttcttccatcattcccaaaataaccctcaaactcaaaattacaattttcaatacacaatgacttctcaagactcaaacaccctttata |
144 |
Q |
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| T |
19100556 |
actaccatgaccatcttccatgattcccaaattaaccctcaaacccaaaactacaatttccaat-cacaatgattcctcaaggctaaaacaccctttata |
19100654 |
T |
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| Q |
145 |
ta |
146 |
Q |
| |
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|| |
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| T |
19100655 |
ta |
19100656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 5302418 - 5302458
Alignment:
| Q |
229 |
gagttatgttttaccaatttcatttattgtcagtcaaaagt |
269 |
Q |
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| T |
5302418 |
gagttatgttttaccaatttcatttattgtcagtcaaaagt |
5302458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 146
Target Start/End: Complemental strand, 15620008 - 15619868
Alignment:
| Q |
6 |
ataagtcttggtgagaaaaggaggcaccttatcggaactactaccctgagcttcttccatcattcccaaaataaccctcaaactcaaaattacaattttc |
105 |
Q |
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| T |
15620008 |
ataagtcttactaagaaaaggaggcacatgattgaaatgactaccttgagccacttccatcattttcaaaataaccctcaaacccaaatctacaattttc |
15619909 |
T |
|
| Q |
106 |
aatacacaatgacttctcaagactcaaacaccctttatata |
146 |
Q |
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||||| ||||| | | |||| ||||||||||||||||||| |
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| T |
15619908 |
gatacataatgattccacaaggctcaaacaccctttatata |
15619868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 20681413 - 20681312
Alignment:
| Q |
45 |
actaccctgagcttcttccatcattcccaaaataaccctcaaactcaaaattacaattttcaatacacaatgacttctcaagactcaaacaccctttata |
144 |
Q |
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|||||| ||| | |||||||||||||| ||||||||||||| || ||||| || ||||||||||||||||||| | || ||| | ||||||||||||| |
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| T |
20681413 |
actaccatgaccatcttccatcattccaaaaataaccctcacacccaaaactaaaattttcaatacacaatgattccttaaggcaataacaccctttata |
20681314 |
T |
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| Q |
145 |
ta |
146 |
Q |
| |
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|| |
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|
| T |
20681313 |
ta |
20681312 |
T |
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