View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19490_low_24 (Length: 258)

Name: NF19490_low_24
Description: NF19490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19490_low_24
NF19490_low_24
[»] chr6 (6 HSPs)
chr6 (70-145)||(26653347-26653422)
chr6 (70-145)||(26759315-26759390)
chr6 (196-232)||(29201195-29201231)
chr6 (96-148)||(6797078-6797130)
chr6 (115-148)||(1875146-1875179)
chr6 (104-148)||(23652672-23652716)
[»] chr4 (8 HSPs)
chr4 (82-148)||(51164568-51164634)
chr4 (96-148)||(25064123-25064175)
chr4 (74-148)||(30617606-30617680)
chr4 (104-148)||(52355897-52355941)
chr4 (61-148)||(8069927-8070013)
chr4 (97-148)||(27981723-27981773)
chr4 (85-148)||(39308118-39308181)
chr4 (91-148)||(7209251-7209308)
[»] chr1 (13 HSPs)
chr1 (96-148)||(41024832-41024884)
chr1 (61-148)||(26758486-26758573)
chr1 (85-148)||(38081631-38081694)
chr1 (90-148)||(37633679-37633737)
chr1 (104-148)||(9424580-9424623)
chr1 (104-148)||(30561987-30562030)
chr1 (90-144)||(22915208-22915262)
chr1 (90-148)||(42489235-42489293)
chr1 (83-139)||(6811717-6811773)
chr1 (85-145)||(37209844-37209904)
chr1 (92-148)||(37596500-37596556)
chr1 (92-144)||(40619552-40619604)
chr1 (104-148)||(43457951-43457995)
[»] chr2 (9 HSPs)
chr2 (66-148)||(4570777-4570859)
chr2 (90-148)||(11563478-11563536)
chr2 (74-148)||(31597140-31597213)
chr2 (102-145)||(2764132-2764175)
chr2 (85-146)||(2985249-2985309)
chr2 (92-148)||(37624993-37625049)
chr2 (90-148)||(39187513-39187571)
chr2 (96-148)||(35977351-35977403)
chr2 (95-123)||(38606911-38606939)
[»] chr7 (9 HSPs)
chr7 (73-134)||(2456738-2456799)
chr7 (92-149)||(6248449-6248505)
chr7 (111-149)||(6181637-6181675)
chr7 (74-144)||(46923653-46923723)
chr7 (85-148)||(31765400-31765463)
chr7 (90-148)||(24393533-24393591)
chr7 (70-139)||(40720404-40720473)
chr7 (92-148)||(39927693-39927748)
chr7 (104-148)||(46875227-46875271)
[»] chr3 (6 HSPs)
chr3 (31-148)||(16277551-16277668)
chr3 (96-148)||(48953928-48953980)
chr3 (85-148)||(50170515-50170578)
chr3 (85-146)||(41928852-41928913)
chr3 (96-148)||(46010384-46010436)
chr3 (74-148)||(54261839-54261913)
[»] chr5 (3 HSPs)
chr5 (85-148)||(22874245-22874308)
chr5 (74-148)||(15595024-15595097)
chr5 (90-134)||(28735344-28735388)
[»] scaffold1173 (1 HSPs)
scaffold1173 (90-147)||(148-205)
[»] chr8 (4 HSPs)
chr8 (92-144)||(11599638-11599690)
chr8 (85-140)||(12733791-12733846)
chr8 (91-148)||(8059958-8060015)
chr8 (104-148)||(44328525-44328569)


Alignment Details
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 145
Target Start/End: Complemental strand, 26653422 - 26653347
Alignment:
Q  70 agctaaatatacaaattttatcttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatat 145  Q
    |||||||| || || |||| ||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||    
T  26653422 agctaaatgtaaaacttttttcttgaaaattgtacattcaatgtcttaaaagtttcaaaagttatattttcaatat 26653347  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 145
Target Start/End: Complemental strand, 26759390 - 26759315
Alignment:
Q  70 agctaaatatacaaattttatcttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatat 145  Q
    |||||||| || || |||| ||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||    
T  26759390 agctaaatgtaaaacttttttcttgaaaattgtacattcaatgtcttaaaagtttcaaaagttatattttcaatat 26759315  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 29201195 - 29201231
Alignment:
Q  196 acttcttccatggccatccaatttcttcagtactgtt 232  Q
    |||||||||||||||||||||||||||||||||||||    
T  29201195 acttcttccatggccatccaatttcttcagtactgtt 29201231  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 6797078 - 6797130
Alignment:
Q  96 aaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    |||||||||||||||||  |||||||||||||||||| | |||| ||||||||    
T  6797078 aaattatacattcaatgcattaaaagtttcaaaagttgtattttcaatataaa 6797130  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 1875146 - 1875179
Alignment:
Q  115 ttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    |||||||||||||||||||| |||||||||||||    
T  1875146 ttaaaagtttcaaaagttatatttttaatataaa 1875179  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 23652672 - 23652716
Alignment:
Q  104 cattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    |||||||| |||||||||||||||||||||| |||| | ||||||    
T  23652672 cattcaatatcttaaaagtttcaaaagttattttttcagtataaa 23652716  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 148
Target Start/End: Complemental strand, 51164634 - 51164568
Alignment:
Q  82 aaattttatcttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    ||||||| ||||||||| | | ||||||||||||||||||||||||||||||| |||| ||||||||    
T  51164634 aaattttttcttgaaaagtgtgcattcaatgtcttaaaagtttcaaaagttattttttcaatataaa 51164568  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 25064175 - 25064123
Alignment:
Q  96 aaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    ||||| || |||||||||||||||||||||||||||||| |||| ||||||||    
T  25064175 aaattgtaaattcaatgtcttaaaagtttcaaaagttatcttttcaatataaa 25064123  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 30617680 - 30617606
Alignment:
Q  74 aaatatacaaattttatcttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    ||||||| || |||| ||||| ||||| | |||||||| ||||||||||||||||||||||  ||| ||||||||    
T  30617680 aaatatagaagttttttcttggaaattgtgcattcaatctcttaaaagtttcaaaagttatcctttcaatataaa 30617606  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 52355941 - 52355897
Alignment:
Q  104 cattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    ||||||||||||||||||||||||||||||| |||| | ||||||    
T  52355941 cattcaatgtcttaaaagtttcaaaagttatattttcattataaa 52355897  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 8069927 - 8070013
Alignment:
Q  61 aagttaaagagctaaatatacaaattttatcttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    |||||||| ||  ||||||| || |||| |||||||| || ||||||||| || ||||||||||||||| |||| |||| ||||||||    
T  8069927 aagttaaaaagtcaaatatataagttttttcttgaaa-ttgtacattcaaagttttaaaagtttcaaaaattatattttcaatataaa 8070013  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 27981773 - 27981723
Alignment:
Q  97 aattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    |||| |||||||||||||||||||||||||||| |||| |||| ||||||||    
T  27981773 aattgtacattcaatgtcttaaaagtttcaaaa-ttatattttcaatataaa 27981723  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 148
Target Start/End: Complemental strand, 39308181 - 39308118
Alignment:
Q  85 ttttatcttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    |||| |||| |||||||| |||| ||| |||||||| |||| ||||||||||||||||| ||||    
T  39308181 ttttttcttaaaaattatgcatttaatatcttaaaaatttctaaagttatgtttttaatttaaa 39308118  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 7209251 - 7209308
Alignment:
Q  91 cttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    ||||||| || | |||||||||||||||||||| ||||||||||  ||| ||||||||    
T  7209251 cttgaaacttgtgcattcaatgtcttaaaagttgcaaaagttatactttcaatataaa 7209308  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 41024884 - 41024832
Alignment:
Q  96 aaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    ||||| ||||||||||||||||||||||||||||||||| |||| ||||||||    
T  41024884 aaattgtacattcaatgtcttaaaagtttcaaaagttatattttcaatataaa 41024832  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 26758486 - 26758573
Alignment:
Q  61 aagttaaagagctaaatatacaaattttatcttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    |||||||  ||| ||||||| |||| || | ||||||||| | |||||||||| |||||||||||||||||||| |||| ||||||||    
T  26758486 aagttaagaagccaaatatataaatgtttttttgaaaattgtgcattcaatgtgttaaaagtttcaaaagttatattttcaatataaa 26758573  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 148
Target Start/End: Complemental strand, 38081694 - 38081631
Alignment:
Q  85 ttttatcttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    |||| ||||| ||||| | ||||||||||||||||||||||||||||||| |||| ||||||||    
T  38081694 ttttttcttggaaattgtgcattcaatgtcttaaaagtttcaaaagttatcttttcaatataaa 38081631  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 37633737 - 37633679
Alignment:
Q  90 tcttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    |||| |||||| | ||||||||||||||||||||||||||||||| |||| || |||||    
T  37633737 tcttaaaaattgtgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaa 37633679  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 9424580 - 9424623
Alignment:
Q  104 cattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    |||||||||| |||||||||||||||||||| |||||||||||||    
T  9424580 cattcaatgt-ttaaaagtttcaaaagttatatttttaatataaa 9424623  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 30562030 - 30561987
Alignment:
Q  104 cattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||    
T  30562030 cattcaatgtcttaaaa-tttcaaaagttatctttttaatataaa 30561987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 22915262 - 22915208
Alignment:
Q  90 tcttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaata 144  Q
    |||||||| || ||||||||||| ||||||| ||||||||||||| |||| ||||    
T  22915262 tcttgaaagttttacattcaatgacttaaaaatttcaaaagttatcttttcaata 22915208  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 42489293 - 42489235
Alignment:
Q  90 tcttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    |||||||| || | |||||| ||||||||||||| ||||||||||  ||||||||||||    
T  42489293 tcttgaaacttgtgcattcattgtcttaaaagttgcaaaagttatacttttaatataaa 42489235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 6811773 - 6811717
Alignment:
Q  83 aattttatcttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttt 139  Q
    |||||| | |||||| || | |||||||||||||| |||||||||||||||| ||||    
T  6811773 aatttttttttgaaagttgtgcattcaatgtcttacaagtttcaaaagttatatttt 6811717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 37209844 - 37209904
Alignment:
Q  85 ttttatcttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatat 145  Q
    |||| ||||| ||||| | |||| ||| |||||||||||||||||||||| |||| |||||    
T  37209844 ttttttcttggaaattgtgcatttaatatcttaaaagtttcaaaagttatcttttcaatat 37209904  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 37596556 - 37596500
Alignment:
Q  92 ttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    |||||| || |||||||||| |||||||| || ||||| |||| |||||||||||||    
T  37596556 ttgaaacttgtacattcaatatcttaaaaattgcaaaaattatatttttaatataaa 37596500  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 40619604 - 40619552
Alignment:
Q  92 ttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaata 144  Q
    ||||||||| | |||||||| |||||||||||| |||| |||| |||||||||    
T  40619604 ttgaaaattgtgcattcaatatcttaaaagtttaaaaatttatttttttaata 40619552  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 43457995 - 43457951
Alignment:
Q  104 cattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    |||||||||||||||||||| ||||||||||  ||| ||||||||    
T  43457995 cattcaatgtcttaaaagttgcaaaagttatactttcaatataaa 43457951  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 4570859 - 4570777
Alignment:
Q  66 aaagagctaaatatacaaattttatcttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    ||||||||||||||| ||| || || || |||||| |||||||||||||||||||| || |||| |||| |||||||| ||||    
T  4570859 aaagagctaaatataaaaaattaattttaaaaattgtacattcaatgtcttaaaagatttaaaacttatatttttaatttaaa 4570777  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 11563478 - 11563536
Alignment:
Q  90 tcttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    ||||||||||| | ||||||||||||||||||||||||| ||||| |||| ||||||||    
T  11563478 tcttgaaaattgtgcattcaatgtcttaaaagtttcaaaggttatattttcaatataaa 11563536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 31597140 - 31597213
Alignment:
Q  74 aaatatacaaattttatcttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    ||||||| ||||||| |||||||| || |||||| ||| ||||||||| |||||||||||| |||||||||||||    
T  31597140 aaatatataaattttttcttgaaa-ttgtacatttaatatcttaaaagcttcaaaagttatctttttaatataaa 31597213  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 145
Target Start/End: Original strand, 2764132 - 2764175
Alignment:
Q  102 tacattcaatgtcttaaaagtttcaaaagttatgtttttaatat 145  Q
    ||||||||||||||||||||||||||||||||| |||| |||||    
T  2764132 tacattcaatgtcttaaaagtttcaaaagttatcttttcaatat 2764175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 2985249 - 2985309
Alignment:
Q  85 ttttatcttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatata 146  Q
    |||| |||| |||||| | |||||||||||||||||||||| |||||||| |||||||||||    
T  2985249 ttttttcttaaaaattgtgcattcaatgtcttaaaagtttc-aaagttatatttttaatata 2985309  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 37624993 - 37625049
Alignment:
Q  92 ttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    ||||||||| | |||||||| |||||||||||| ||||||||| |||| ||||||||    
T  37624993 ttgaaaattgtgcattcaatatcttaaaagttttaaaagttatattttcaatataaa 37625049  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 39187513 - 39187571
Alignment:
Q  90 tcttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    |||||||| || | |||||||| ||||||||||| |||||||||| |||| ||||||||    
T  39187513 tcttgaaacttgtgcattcaatatcttaaaagttgcaaaagttatattttcaatataaa 39187571  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 35977351 - 35977403
Alignment:
Q  96 aaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    ||||||| ||||||||||||| ||| ||| ||||||||| |||| ||||||||    
T  35977351 aaattatgcattcaatgtcttgaaaatttaaaaagttattttttcaatataaa 35977403  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 38606939 - 38606911
Alignment:
Q  95 aaaattatacattcaatgtcttaaaagtt 123  Q
    |||||||||||||||||||||||||||||    
T  38606939 aaaattatacattcaatgtcttaaaagtt 38606911  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 2456738 - 2456799
Alignment:
Q  73 taaatatacaaattttatcttgaaaattatacattcaatgtcttaaaagtttcaaaagttat 134  Q
    |||||||| || |||| |||||||||||| ||||||||| | ||||||||||||||||||||    
T  2456738 taaatataaaagttttttcttgaaaattacacattcaatatattaaaagtttcaaaagttat 2456799  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 6248505 - 6248449
Alignment:
Q  92 ttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaac 149  Q
    ||||||||| ||| || ||||||||||||||||||||| |||||||||||||||||||    
T  6248505 ttgaaaattgtacttttaatgtcttaaaagtttcaaaa-ttatgtttttaatataaac 6248449  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 149
Target Start/End: Complemental strand, 6181675 - 6181637
Alignment:
Q  111 tgtcttaaaagtttcaaaagttatgtttttaatataaac 149  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  6181675 tgtcttaaaagtttcaaaagttatgttttcaatataaac 6181637  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 46923723 - 46923653
Alignment:
Q  74 aaatatacaaattttatcttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaata 144  Q
    ||||||| || |||| ||||||||||| | |||| ||||| |||||||||||||||||||| |||| ||||    
T  46923723 aaatatagaagttttttcttgaaaattgtgcatttaatgttttaaaagtttcaaaagttatattttgaata 46923653  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 148
Target Start/End: Complemental strand, 31765463 - 31765400
Alignment:
Q  85 ttttatcttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    |||| ||||| ||||| |||||   ||||||||||||||||||||||||| |||| ||||||||    
T  31765463 ttttttcttggaaattgtacatctgatgtcttaaaagtttcaaaagttatcttttcaatataaa 31765400  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 24393533 - 24393591
Alignment:
Q  90 tcttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    |||||||| |||| |||||||||||||||||||| ||||| ||||  ||| ||||||||    
T  24393533 tcttgaaacttatccattcaatgtcttaaaagttgcaaaaattatactttcaatataaa 24393591  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 40720404 - 40720473
Alignment:
Q  70 agctaaatatacaaattttatcttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttt 139  Q
    ||||||||||  || |||||| ||||||||||| |||| ||| |||||||||||| |||| |||| ||||    
T  40720404 agctaaatatggaacttttattttgaaaattatgcatttaatatcttaaaagttttaaaaattatatttt 40720473  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 39927693 - 39927748
Alignment:
Q  92 ttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    ||||||||||| |||| | | |||||||| ||||||||||||| |||||||||||||    
T  39927693 ttgaaaattatgcattta-tatcttaaaaatttcaaaagttatatttttaatataaa 39927748  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 46875227 - 46875271
Alignment:
Q  104 cattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    ||||||||||||||||| ||| ||||||||  |||||||||||||    
T  46875227 cattcaatgtcttaaaaatttaaaaagttacatttttaatataaa 46875271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 16277551 - 16277668
Alignment:
Q  31 agggaaatgttaatttatgtcattgaaacaaagttaaagagctaaatatacaaattttatcttgaaaattatacattcaatgtcttaaaagtttcaaaag 130  Q
    ||||| ||||||| ||||| | |||||   |||||||| ||  ||||||| || |||| | ||  ||||| | ||||||||| |||||||||||||||||    
T  16277551 agggacatgttaacttatgcccttgaacataagttaaaaagtcaaatataaaagtttttttttagaaattgtgcattcaatgccttaaaagtttcaaaag 16277650  T
Q  131 ttatgtttttaatataaa 148  Q
    |||| |||||||||||||    
T  16277651 ttatatttttaatataaa 16277668  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 48953928 - 48953980
Alignment:
Q  96 aaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    ||||| |||||||||||| |||||||||||||||||||| |||| ||||||||    
T  48953928 aaattgtacattcaatgttttaaaagtttcaaaagttatcttttcaatataaa 48953980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 148
Target Start/End: Complemental strand, 50170578 - 50170515
Alignment:
Q  85 ttttatcttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    |||| ||||| ||||| | ||||||||||||||||| ||||||||||||| |||| ||||||||    
T  50170578 ttttttcttggaaattgtgcattcaatgtcttaaaaatttcaaaagttatcttttcaatataaa 50170515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 41928913 - 41928852
Alignment:
Q  85 ttttatcttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatata 146  Q
    |||| ||||||||| | || ||| |||||||||||| ||||||||||||| |||||||||||    
T  41928913 ttttttcttgaaaaatgtagatttaatgtcttaaaattttcaaaagttatatttttaatata 41928852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 46010384 - 46010436
Alignment:
Q  96 aaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    ||||||| |||||||| |||||||| ||| ||||||||| |||||||||||||    
T  46010384 aaattatgcattcaatatcttaaaaattttaaaagttatatttttaatataaa 46010436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 54261913 - 54261839
Alignment:
Q  74 aaatatacaaattttatcttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    ||||||| ||| ||| |||||||| || | |||||||| ||||||||||| |||||||||   ||||||||||||    
T  54261913 aaatatagaaagtttttcttgaaacttgtgcattcaatatcttaaaagttgcaaaagttagacttttaatataaa 54261839  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 148
Target Start/End: Original strand, 22874245 - 22874308
Alignment:
Q  85 ttttatcttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    |||||| ||||||||| | |||||||| | |||||| ||||||||||||| |||||||||||||    
T  22874245 ttttattttgaaaattgtgcattcaattttttaaaaatttcaaaagttatatttttaatataaa 22874308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 15595097 - 15595024
Alignment:
Q  74 aaatatacaaattttatcttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    ||||||| || |||| |||| |||||| | |||||||||||| |||||||||||||||||| |||| ||||||||    
T  15595097 aaatataaaagttttttctttaaaattgtgcattcaatgtct-aaaagtttcaaaagttattttttcaatataaa 15595024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 28735388 - 28735344
Alignment:
Q  90 tcttgaaaattatacattcaatgtcttaaaagtttcaaaagttat 134  Q
    |||||||| ||  ||||||||||||||||||||| ||||||||||    
T  28735388 tcttgaaacttgcacattcaatgtcttaaaagttgcaaaagttat 28735344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1173 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1173
Description:

Target: scaffold1173; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 205 - 148
Alignment:
Q  90 tcttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataa 147  Q
    |||||||| || | |||||||| ||||||||||||||||||||||  |||||||||||    
T  205 tcttgaaacttgtgcattcaatatcttaaaagtttcaaaagttatacttttaatataa 148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 11599638 - 11599690
Alignment:
Q  92 ttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaata 144  Q
    ||||||||| | |||| |||||||||||||||| ||||||||| |||||||||    
T  11599638 ttgaaaattgtgcatttaatgtcttaaaagtttgaaaagttatctttttaata 11599690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 12733791 - 12733846
Alignment:
Q  85 ttttatcttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgttttt 140  Q
    |||| ||||||||  ||| |||| |||||||||||||||||||||||||| |||||    
T  12733791 ttttttcttgaaacatatgcattaaatgtcttaaaagtttcaaaagttatcttttt 12733846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 8059958 - 8060015
Alignment:
Q  91 cttgaaaattatacattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    |||| ||||| | ||||||||||||||||||| |||||||||||   |||||||||||    
T  8059958 cttggaaattgtgcattcaatgtcttaaaagtctcaaaagttataaatttaatataaa 8060015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 44328525 - 44328569
Alignment:
Q  104 cattcaatgtcttaaaagtttcaaaagttatgtttttaatataaa 148  Q
    ||||||||||||||||| || ||||||||||  ||||||||||||    
T  44328525 cattcaatgtcttaaaaattgcaaaagttatacttttaatataaa 44328569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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