View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19490_low_3 (Length: 503)
Name: NF19490_low_3
Description: NF19490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19490_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 71 - 487
Target Start/End: Complemental strand, 43142579 - 43142163
Alignment:
| Q |
71 |
gtatctaatcatgatattttatacggctttatcaaaatacatcgtcatcattgcttccataatacgttgagttgaagtcaccaactctgacccaacatgc |
170 |
Q |
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| T |
43142579 |
gtatctaatcatgatattttatacggctttatcaaaatacatcgtcatcattgcttccataatacgttgagatgaagtcaccaactctgacccaacatgc |
43142480 |
T |
|
| Q |
171 |
ttcccttttggtctataaatatagccaaacacatcctttagtttccataccatgttacaaagcaagagaaaaagtatccattgaattaatattaacaatc |
270 |
Q |
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| T |
43142479 |
ttcccttttggtctatatatatagccaaacacatcctttagtttccataccatgttacaaagcaagagaaaaagtatccattgaattaatattaacaacc |
43142380 |
T |
|
| Q |
271 |
tctctgttttcctctgtttctcacacaacacaatggaacacaaaatgaaaaccactacttctcctcctcatctaccaatcccaattcatgttcccattca |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43142379 |
tctctgttttcctctgtttctcacacaacacaatggaacacaaaatgaaaaccactacttctcctcctcatctaccaatcccaattcatgttcccattca |
43142280 |
T |
|
| Q |
371 |
caccatgctatcaaactctacaccatcttcatcttcttcacctcctttacaatctcccacacctttcccttcaccaccttctcaatattctcctccctct |
470 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43142279 |
caccatgctatcaaactctacaccttcttcatcttcttcacctcctttacaatctcccacacctttcccttcaccaccttctcaatattctcctccctct |
43142180 |
T |
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| Q |
471 |
gctgctcctcaaccacc |
487 |
Q |
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||||||||||||||||| |
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| T |
43142179 |
gctgctcctcaaccacc |
43142163 |
T |
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